Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1047 ATGGAGTCTGGTGAGGAGATTAATTTGAATATAGAAAGTGGTGGTGGAAATAATGGGAAGAGTGGTGATGGGTTCATTGATAGAAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTGACTTTAGTAAAGTCGCCGAGACAGGTAATTGACGCGCTGAATGCAGAGGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCAACAAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCTGACTATCTAGTAAAGCCCTTACGTACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAAAACATCTTGAATTATGAGTTTGATCTTGTAGCATCAGATCCCAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCAACAATCCAGAGGTGGGATTGTCAGTCCAACAAGAGCAAGAGTCTACTATTGCTGCTGTTGAGAAACCTCTAGACGCTCATGCATCAGAACACGGGCCTGAAGTTGATGGATTTCATGATCATCGAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAATTAAGGATAGGGGAGTCATCAGCCTTTTTCACGTATGTCAAAGCATCTATACTGAAGAGCAACTTTGAAGGGGTTGTTAACGTAGACAACCATGGGGCTGCACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTACAAACACGTGAAAATGGAGAGACCTGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAGTAGTATACCTGATTCTCTCTCTATGGAAAGGTCTTGTACTCCACCTGCATCGATGGAAGTTTCCCCGCAAAAGCACAAGGAAGAAAATTTCCATCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGTCTTCCCAACATACTTATCCATATTATATTTCAGGAGTTGTTAATCATGTCATGATGCCTTCATCTGCACAAATGTATCACCAGAAGAATATGCAGGACCTACAGAATCATCCTAGTGCAGCTATGATTGCTCAATACAGTCATCTTCCCCAAGGTGGTCCTCACGGACCAGGGATGACATCTTTCCCATACTACCCAATGAGTATATGCTTACAACCTGGTCAGGTTCCTCAACCCCATTCATGGCCATCATTTGGCAGCTCAAGTTCATCAGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGTTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGACGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAATTAAACAGTGCCAATGTTGATCTCAATGGACAGCCTGCATCAATTGACTATGATGAAGATGATGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1674 0.4325 MESGEEINLNIESGGGNNGKSGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTLVKSPRQVIDALNAEGQHIDIILAELDLPTKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSKRSNNPEVGLSVQQEQESTIAAVEKPLDAHASEHGPEVDGFHDHRTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNHGAAHVRMEVMHQACAQQGVNDLQTRENGETCESQSQDDLPSSSSIPDSLSMERSCTPPASMEVSPQKHKEENFHQGVMHPRNGTHCSEHEVSGMSSQHTYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSAAMIAQYSHLPQGGPHGPGMTSFPYYPMSICLQPGQVPQPHSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIDYDEDDEEDEDDQGARDSSPEDA* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1047 557 MobiDBLite consensus disorder prediction 225 246 - -
Vra3g1047 557 MobiDBLite consensus disorder prediction 453 473 - -
Vra3g1047 557 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Vra3g1047 557 SUPERFAMILY CheY-like 27 157 IPR011006 -
Vra3g1047 557 ProSiteProfiles CCT domain profile. 477 519 IPR010402 GO:0005515
Vra3g1047 557 MobiDBLite consensus disorder prediction 453 469 - -
Vra3g1047 557 MobiDBLite consensus disorder prediction 307 343 - -
Vra3g1047 557 Pfam CCT motif 477 519 IPR010402 GO:0005515
Vra3g1047 557 MobiDBLite consensus disorder prediction 179 210 - -
Vra3g1047 557 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 539 IPR045279 GO:0009736
Vra3g1047 557 MobiDBLite consensus disorder prediction 307 350 - -
Vra3g1047 557 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 3 539 - -
Vra3g1047 557 SMART REC_2 31 146 IPR001789 GO:0000160
Vra3g1047 557 MobiDBLite consensus disorder prediction 533 557 - -
Vra3g1047 557 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Vra3g1047 557 MobiDBLite consensus disorder prediction 522 557 - -
Vra3g1047 557 MobiDBLite consensus disorder prediction 225 249 - -
Vra3g1047 557 Gene3D - 31 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1047 Vra-Chr3 10571692 10576727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1047 20 556 Response Regulator Gene Family AT5G61380 50.318 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vra3g1047 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1047 K12127 - gmx:100799728 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1047 3 10571692 10576727 Vra3g1047 3 10571692 10576727 ECH