Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1045 ATGAGGGGTGGGAGAAAGAGGAGTATGATAAAGCTTAAGTTTAGCAAGATCTACTCATTTGCTTGTGGTAGAACAACCTTGAAGAGAGAACATTCGCGGATTGGGGGACATGGTCATTCCAGGGTGGTTTTCTGCAATGAACCTGATAGGTTTGAGGTAGGGGTTTTCAATTATGCTGATAATTCTGTTAGGTCCACAAAATACACGGTTGCTACTTTCTTGCCAAAGTCACTTTTTGAGCAGTTTAGGAGGGTGGCCAATTTCTATTTCTTGGTGGCTGGGATCTTGGCCTTCACAAAGCTTACTCCTTATACTGCTGTCAGTGCTATCCTTCCACTCTCTATCATCATTGGGGCTACTATGGTGAAAGAGGGTATTGAAGACTGGCGCAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATATTGCATAAAGGTGATGGCATTTTTGAATATACTGAATGGAAGAATCTGAGAGTAGGGGATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCCTACTGCTTTCCTCCAGTTATGAGGATGCAGTATGCTATGTTGAGACCATGAACTTGGATGGTGAAACAAATTTGAAATTAAAACAAGGGTTGGATGTAACTTCTTCCTTACAGGAGGACTTCAAAATATGTGATTTTAGAGCTGTCATCAAATGTGAGGACCCAAATGCAAATCTGTATTCTTTTGTTGGGAGCATGGAGTTTGAAGAGCAAAAGTACCCTCTTTCTGCCCAGCAACTTCTTCTGAGAGACTCCAAACTTCGCAATACAGACTATGTGTTTGGAGCCGTCGTCTTTACTGGTCATGACACAAAGGTTATTCAAAACTCCACTGATCCTCCTTCCAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATCTACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTATCTTTGGCATCATAACCAAAGGAGACCTGAAAAATGGGTTGATGAAAAGATGGTATCTAAGACCAGATAGTTCCACAATTTTCTTTGATCCAGAGAGAGCAGCTGCAGCTGCTATATTTCATTCTTTAACAGCCTTAATGTTATATAACTTCTTTATTCCTATCTCTCTGTATTTCTCAATAGAAATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCACATGTACTATGAAGAAGCAGACAAACCAGCTCGTGCCCGTACTTCAAACTTGAATGAGGAACTAGGCCAAGTTGACACAATACTTTCTGATAAAACTGGGACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGCTGGGGTAGCTTATGGTCATGGTGTAACAGAGGTTGAGCAAGTCATTGGAAGAAGTAACGGTTCACCTATTCTTCATGAGCATATTAATGGTCTAAAATCAAAATCTAATGAAATCGGGGACTCTCCTGATAGAAAAGAGCCTATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTTTTGCTGATGTTATACAAAAGTTTTTTCGCTTATTGGCAATTTGTCATACTGCCATACCTGAAGTGGATGAAGAAACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTGCAAGTGAAGTTGGTTTTAAATTCTACAAAAGGACCCAGAATTGCTTGTCAATGTATGAGTTGGATCCTGTTTCTGGTAATGAAGTTGAAAGATTAATTTCAATTAATAGGACATACAAGCTTCTCAATGTTTTAGAGTTTAGTAGTTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTACTACTCTCTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAAAATGGGAGGACGTTTGAAGAGAAAACAATGGAACATGTGCATGAATATGCTGATGCAGGTCTAAGGACTCTAATTCTTTCTTATCGTGAACTTGATGAAGAAGAATACAAGGAGTTTGATGGTAAATTGTCTGAAGTAAAAAGTTCAGTCTCAGAAGACCGGGAAACACTGATTGAAGAATTATTGGATACGATTGAGAGGAATCTAATCCTTCTTGGTGCCACTGCCGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATCGACAAGCTAGCCCAAGCTAAGATTAAGATTTGGGTTTTGACTGGAGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTCGCTTGCTTAGACAAGGAATGAAACAAATTATAATTCATTTGGAGATTCCAGAAATTCAAGCGTTAGAAAAGGTTGGAGACAAGATGGCTGTTGTGAAGGTATCAAGGGAAAGTGTGCATCATCAGCTATCTGAAGGTGCTCAACTGCTTTATGCATCCAGAGGGACTTGCCAGCAGAAATTTGCTCTGATCATTGATGGAAAATCACTAACATATGCTCTAGAGGATAATATGAAAAACATGTTTTTAGAGCTTGCAAGTCATTGTGCATCGGTTATTTGTTGCCGCTCATCACCAAAGCAGAAGGCTCTGGTTACTAGACTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATCGGTGATGGAGCTAATGATGTCGGAATGCTTCAAGAAGCAGACATAGGGATTGGAATCAGTGGCGTTGAAGGAATGCAGGCCGTCATGTCTAGTGATATTGCCATTGCGCAGTTCAAGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTTTAAGAACATCACATTTGGATTCACCCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCGTACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCGTCACTTCCTGTAATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCCTGAAGTTTCCTATCTTATACCAAGAAGGGGTGCAAAATGTCCTCTTTAGCTGGCGTATAGTACTAAGTTGGATGCTTAATGGATTTATTAATGCCACAATGATATTCTTCTTCTGCACAAAAGCAATTGAGCCTCAGGCCTTTGATGAGGAGGGAAGAACAGCCGGAAGGGATATGCTGGGCGTGACAATGTATACCTGCGTGGTTTGGGTGGTGAACTTGCAGATGGCACTTGCTATACGTTATTTCACCTTGATACAACATATTTTTATCTGGGGTTCCATTGCTTTCTGGTATCTTTTCCTCCTGGCATATGGAGCAATGCCTCCAAAAATTTCTACAAATGTTTATCAAGTCTTCATTGAAACTCTCGCCACATCTCCTTCCTATTGGGCTGTGACATTCTTTGTGGCGATCTCAACACTTATACCATACTTCACATTCTCAGTAATTCAGATGTGGTTCTTCCCCATGTATCACCAAATGGTACAGTGGATAAGGTATGAGAGGAAGACAAATGGCTCTGAATAA 3525 0.4003 MRGGRKRSMIKLKFSKIYSFACGRTTLKREHSRIGGHGHSRVVFCNEPDRFEVGVFNYADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLTPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVILHKGDGIFEYTEWKNLRVGDIVKIMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLQEDFKICDFRAVIKCEDPNANLYSFVGSMEFEEQKYPLSAQQLLLRDSKLRNTDYVFGAVVFTGHDTKVIQNSTDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSIIFGIITKGDLKNGLMKRWYLRPDSSTIFFDPERAAAAAIFHSLTALMLYNFFIPISLYFSIEIVKVLQSIFINQDIHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGHGVTEVEQVIGRSNGSPILHEHINGLKSKSNEIGDSPDRKEPIKGFNFTDERIMNGNWVNEPFADVIQKFFRLLAICHTAIPEVDEETGNVSYEAESPDEAAFVIAASEVGFKFYKRTQNCLSMYELDPVSGNEVERLISINRTYKLLNVLEFSSSRKRMSVIVKDEEGRILLLSKGADSVMFERLAKNGRTFEEKTMEHVHEYADAGLRTLILSYRELDEEEYKEFDGKLSEVKSSVSEDRETLIEELLDTIERNLILLGATAVEDKLQNGVPDCIDKLAQAKIKIWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLEIPEIQALEKVGDKMAVVKVSRESVHHQLSEGAQLLYASRGTCQQKFALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRMSSMICYFFFKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKFPILYQEGVQNVLFSWRIVLSWMLNGFINATMIFFFCTKAIEPQAFDEEGRTAGRDMLGVTMYTCVVWVVNLQMALAIRYFTLIQHIFIWGSIAFWYLFLLAYGAMPPKISTNVYQVFIETLATSPSYWAVTFFVAISTLIPYFTFSVIQMWFFPMYHQMVQWIRYERKTNGSE* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1045 1174 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1155 IPR032630 -
Vra3g1045 1174 Pfam Phospholipid-translocating ATPase N-terminal 44 109 IPR032631 -
Vra3g1045 1174 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9 1174 - -
Vra3g1045 1174 SUPERFAMILY Calcium ATPase, transduction domain A 145 286 IPR008250 -
Vra3g1045 1174 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 849 959 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra3g1045 1174 SFLD C1.7: P-type atpase like 411 928 - -
Vra3g1045 1174 Gene3D - 120 289 - -
Vra3g1045 1174 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 9 1174 - -
Vra3g1045 1174 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 505 714 IPR023299 GO:0000166
Vra3g1045 1174 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1162 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra3g1045 1174 Gene3D - 578 686 IPR023299 GO:0000166
Vra3g1045 1174 CDD P-type_ATPase_APLT_Dnf-like 60 1037 - -
Vra3g1045 1174 ProSitePatterns E1-E2 ATPases phosphorylation site. 429 435 IPR018303 -
Vra3g1045 1174 Gene3D - 708 917 IPR023214 -
Vra3g1045 1174 PRINTS P-type cation-transporting ATPase superfamily signature 427 441 - -
Vra3g1045 1174 PRINTS P-type cation-transporting ATPase superfamily signature 877 896 - -
Vra3g1045 1174 SUPERFAMILY HAD-like 422 932 IPR036412 -
Vra3g1045 1174 Pfam Cation transport ATPase (P-type) 538 638 - -
Vra3g1045 1174 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 1155 IPR023298 -
Vra3g1045 1174 SFLD p-type atpase 411 928 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1045 Vra-Chr3 10477112 10487330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1045 3 1174 Primary Pumps ATPases AT1G68710 70.989 0.0 1787