Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1042 ATGGCTCTTTTCCGAAGGTTCTTTTACCGGAAACCACCCGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATGTCGGGGGGGTTGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTACGAGATGACAGTTATGGAGTATCCTCGGCAATATGAGGGTTGCCCCCTTTTGCCTTTGGAGATGATTCACCACTTCCTTCGATCAAGTGAGAGCTGGTTGTCCTTGGAGAGCCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTTGCGTTTATGCTAGCTGGTCTTATGTTGTACAGGAAACAGTACAATGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCCAAAGAACTTCTCCACCTTCTATCCCCTTTGAATCCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTCGGTGGCCTCCATCAGAAACACCCTTATATTTGGATTGCATTATTCTCAGAGTCCTTCCTCTGTTTGACGGAGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCAACTTCAATGGGCCAAAATCATGTTCGCCACTACTTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGTGAGGAGGTGATGTTCAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATATTGCTGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTAGATGCGAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCAGAAGAGATCTTCAGCAATGTAATTGATGTACTGGAAGGTAAGGGAGATTACGATTTTCTAATGGTTCATGACAGTGAAGTGGATGATGGAAGTCATAAAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCATGTTAGATGATGGGATTCACCAACAGGTTGATGATGCGAGGTACAAGCTTGACAAGAGGGTGGTTTTAGATACTCATGTTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTTATGACAAAGGAAGTCACTCTGAATGCTCTTGATAAATTGGCAGTTAAGCAAAACAAATATGGCGATTCAGAACCAGGGCTGCAGCTGCTTGATATTTCCATACCAAAATCTGATAAGTTACTTATTTCTTCTGAAAATAAACAACTTCCTTCGAACTCAAACTCTATGCAAGAACCACATGGTTTTCAGGCAAATTATGCAAAACCCAATGTAACAACTAGGTCGGTTCCTTCTAGTAAGGGTTCTCTTCAAGATTCCATTAACTTCTCATATCCACCATCAAGGAACAATAGTTCACCACTAACATTGTCATATGTTACCTCTGAAAACAAGGAAATCATTGATGCAAAAGGAAACTCTACTTCTTGTTCTCATGTCTCTGAAGTAATTGCTTTTATGGACACGATAAACGACCTGAAAAACTGTGATGGTGATAACTCAAAATCTTCGGACGCTGTTCCTGAAATAGGCTCAAAGTCTCCAGTATTATCATTACTGTCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGATCAAATGTTACAACTTCATCCACCTCCACCTCCACCTCCACCTCCAATTTTTGGACAAAATAATGGGGCTTTACCTCCTTCTCCTCCCATTGCAAATGGTGTAATTCCATCAAAAATTTCACTAGCACCACCACCACCACCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCTTCGCTTCCTTCTACCTCAATCTCTCCAAAAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTTCACCTCCATTAAGTAAATCTACACCACTTCCTCCGCCTCCTTTAGGTACTGCTCCACCAGCACCACCACCTCCTCCTCCTTTAAGTTCTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCCCCACCACCTCTTCCTCCATCAAGTGGAGCACCACCTCCACCGTCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCACCAACAACAATGCCTGGAGGCACAGCTCCTCCACCACCTTCAGGTGGTCGAGGCCAACCTCCTACTGGAACACGAGCTACTCTTGCTCATTCTCATGTACCTCTTGGTGGTGCCCCTTTTCCTTCACCAATTGGAACTGATACAAGAGGGAAAGGTCGGGGACTTGGACGTCCTACTGGGGCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGCGGGCGGCGCAAATCTGTTGGATCTAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTACACACAGTCAACTCTGCTTGTGAAGAGGTCCGAAACTCATTCAAACTGAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTCTTAAAACTAACCGACACTCGTGCTTCAAATAGTAAAATGACACTTATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTATTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTTAATCAGGAGCTGGCTGCATCTGAAAACGATGGCCCAGTGACTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGGGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGAAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGACCCTGCCCGTTGTCCTTTTGAGCAAGTTACTGCAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGAAGAGAATTGCAAACAAACAGTGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTCATAAGGAAGAGTGGAAAAGATGAAGAAGAAAGTTGA 3852 0.4343 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYVGGVVAQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLESQQNVLLMHCERGGWPVLAFMLAGLMLYRKQYNGEHKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRHLGSRWPPSETPLYLDCIILRVLPLFDGGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYLQAECMLVKIDIRCHVQGDVVLECIHLSDDFVREEVMFRVMFHTAFVRSNILLLSRDEIDIQWDAKDQFPKDFKFEVLFLDADAVMPNLNTVDASDTECASPEAEEFYEAEEIFSNVIDVLEGKGDYDFLMVHDSEVDDGSHKEIWKEYSDPHTFLDSMLDDGIHQQVDDARYKLDKRVVLDTHVVKDIGVDYGVTFMTKEVTLNALDKLAVKQNKYGDSEPGLQLLDISIPKSDKLLISSENKQLPSNSNSMQEPHGFQANYAKPNVTTRSVPSSKGSLQDSINFSYPPSRNNSSPLTLSYVTSENKEIIDAKGNSTSCSHVSEVIAFMDTINDLKNCDGDNSKSSDAVPEIGSKSPVLSLLSVKETSLQLANQAPQQSYDQMLQLHPPPPPPPPPIFGQNNGALPPSPPIANGVIPSKISLAPPPPPPPPPPLQSTNEPSLPSTSISPKTFKAPPPAPRPPHYPSPPLSKSTPLPPPPLGTAPPAPPPPPPLSSAPPPPPPPPSLSRGSPPPPPLPPSSGAPPPPSSSSLSRAPPPPPPPNRGPPPTTMPGGTAPPPPSGGRGQPPTGTRATLAHSHVPLGGAPFPSPIGTDTRGKGRGLGRPTGAGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLHTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLISLEAATKIQLKSLAEEMQAIIRGLEKVNQELAASENDGPVTEVFRKTSKEFIAVAGSEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFTRLFLKAHEENCKQTVLEKKKADKEAEMEKAKGINFIRKSGKDEEES* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1042 1283 PRINTS Proline rich extensin signature 646 662 - -
Vra3g1042 1283 PRINTS Proline rich extensin signature 680 701 - -
Vra3g1042 1283 PRINTS Proline rich extensin signature 701 717 - -
Vra3g1042 1283 PRINTS Proline rich extensin signature 722 739 - -
Vra3g1042 1283 PRINTS Proline rich extensin signature 741 766 - -
Vra3g1042 1283 SMART PTEN_C2_2 198 338 IPR014020 -
Vra3g1042 1283 SMART it6_source 865 1283 IPR015425 -
Vra3g1042 1283 MobiDBLite consensus disorder prediction 678 696 - -
Vra3g1042 1283 MobiDBLite consensus disorder prediction 633 874 - -
Vra3g1042 1283 ProSiteProfiles Formin homology-2 (FH2) domain profile. 865 1266 IPR015425 -
Vra3g1042 1283 MobiDBLite consensus disorder prediction 919 938 - -
Vra3g1042 1283 MobiDBLite consensus disorder prediction 643 661 - -
Vra3g1042 1283 PANTHER FORMIN-J 1 723 - -
Vra3g1042 1283 PANTHER FORMIN-J 707 1270 - -
Vra3g1042 1283 Coils Coil 1241 1261 - -
Vra3g1042 1283 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Vra3g1042 1283 SUPERFAMILY Formin homology 2 domain (FH2 domain) 942 1268 - -
Vra3g1042 1283 Pfam Formin Homology 2 Domain 870 1240 IPR015425 -
Vra3g1042 1283 Gene3D Protein tyrosine phosphatase superfamily 13 206 IPR029021 -
Vra3g1042 1283 MobiDBLite consensus disorder prediction 708 822 - -
Vra3g1042 1283 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vra3g1042 1283 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Vra3g1042 1283 Gene3D Formin, FH2 domain 867 1251 IPR042201 -
Vra3g1042 1283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Vra3g1042 1283 Coils Coil 1147 1174 - -
Vra3g1042 1283 Gene3D - 207 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1042 Vra-Chr3 10416487 10429542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1042 1 671 FH2 protein (formin) Gene Family AT5G07740 52.528 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1042 - - pvu:PHAVU_009G184800g 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1042 3 10416487 10429542 Vra3g1042 3 10416487 10429542 ECH