Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1041 ATGGGGTGTGTCAGCTCGAAGCAGGCGGTGTCAGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGAGCAATGCTGCGGTTCTGGGCGAGTCGGAGCGCAAGGAGAAGAAGAGGAGTAAGAAGAGGACCGAGTCGGGGGGAGCGAGTCTGAGCGAGGTCGGTGAGTCGGGGAGAACGAGTTCCAATTGCGAATCGTTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCAGCGTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCTGCGCCGATGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTGTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGGGGAGTCATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTAAATAATGAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAATTCTGGGCATAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTTGGTTCGACGGACTATGGTCCGGCCGTGGATCTCTGGAGTGTTGGTTGTGTGTTTGCGGAGCTGCTTGTCGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTCTGTGGCTCACCACCTGATGAATACTGGAAAAAGACTAAACTTCCTCATGCAACGTTATTTAAGCCACAACAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTGCCAGCGGCCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGAATGCTACATCTGCTCTTTCATCAGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAACCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGATTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACACGGATTCAGTAAACTAGCCCCAGCAGAGGATTTCGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCATGAAGAAGAGAAGATTAAAATAGGTGGCAAAACACAGAAGTCATCTAGTGGTAAAGCTGAAGATGCTTCCCATACGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCCGGGCCGTTACAGGTTTCAACATCAAGTGGATTTGCATGGGCAAAAAGCAGAAAAGATGACGCTTCATTTCGATCCCATTGTCGAAATATTTCAAGAGGACATATTTTCAATCCATCAGAACCTTCTACATTAAATTTAAGGAATAATTTGGACACCACAAACCAGGAAAATAAAGAGTTTTGTGGGGGAGGCGTCAATTCTAGGGGCCATCAGCTGCTTGAAATTTCTAAGCTTTCAATGCAGAACCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGGCCATATATCACCGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAGCGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGGCGAAAAAATAA 2043 0.4777 MGCVSSKQAVSVTPAIDHSGAFRSNAAVLGESERKEKKRSKKRTESGGASLSEVGESGRTSSNCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLCADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRQSFKDLPAASVHLLQTLLSVEPYKRGNATSALSSEYFKTKPYACDPSTLPIYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPHGFSKLAPAEDFASQTQTSQKVNGRSFRNHEEEKIKIGGKTQKSSSGKAEDASHTKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDASFRSHCRNISRGHIFNPSEPSTLNLRNNLDTTNQENKEFCGGGVNSRGHQLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMAIYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKAKK* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1041 680 MobiDBLite consensus disorder prediction 483 515 - -
Vra3g1041 680 MobiDBLite consensus disorder prediction 413 442 - -
Vra3g1041 680 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 673 - -
Vra3g1041 680 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1041 680 MobiDBLite consensus disorder prediction 29 46 - -
Vra3g1041 680 PANTHER CELL DIVISION PROTEIN KINASE 1 673 - -
Vra3g1041 680 MobiDBLite consensus disorder prediction 468 482 - -
Vra3g1041 680 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vra3g1041 680 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1041 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vra3g1041 680 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g1041 680 Gene3D Transferase(Phosphotransferase) domain 1 193 432 - -
Vra3g1041 680 MobiDBLite consensus disorder prediction 453 467 - -
Vra3g1041 680 MobiDBLite consensus disorder prediction 27 62 - -
Vra3g1041 680 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Vra3g1041 680 SUPERFAMILY Protein kinase-like (PK-like) 103 401 IPR011009 -
Vra3g1041 680 MobiDBLite consensus disorder prediction 405 515 - -
Vra3g1041 680 CDD STKc_CDK9_like 110 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1041 Vra-Chr3 10391048 10398407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1041 102 426 Core Cell Cycle Gene Families AT5G10270 51.026 1.19e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra3g1041 Pkinase 5.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1041 - - var:108332003 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1041 3 10391048 10398407 Vra7g1914 7 38650862 38656996 ECH
Vra3g1041 3 10391048 10398407 Vra3g1041 3 10391048 10398407 ECH