Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1034 ATGGCGGTGAAACTGACAAAAGCGCAGAAGAAGATAGCCTACGATGCCAAACTCTGTCGGCTTCTGGATAACTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTGGGATCCAACCAGCTTCAGAACATCCGACAGGGTCTACGTGGCGACTCCGTGGTGCTCATGGGAAAGAACACCATGATGAAACGCTCTGTCAAACTCCACGCTGAGAGCACCGGCAACAAGGCCTTCCTCAACCTTGTGCCTCTTCTAGTGGGTAATGTTGGGTTGATTTTCACCAAAGGTGACGTGAAGGAGGTCAGCGAAGTGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGGTTGATTGCACCTATTGATGTTGTAGTTCCTCCAGGCAACACAGGGTTGGATCCCTCTCAAACTTCCTTTTTCCAGGTACTGAACATTCCTACAAAAATTAACAAGGGTACTGTGGAAATTATCACTCCTGTGGAACTGATTAGGAAGGGTGAGAAGGTTGGGTCTTCTGAAGCTGCATTGCTTTCGAAGCTTGCGATAAGGCCATTCTCGTATGGGCTTGTTGTGGTTTCTGTTTATGACAACGGTTCGGTGTTTAGTCCTGCGGTTCTTGACCTCACTGACGACGACCTCCTTAATATGTTTGCTGATGGTGTTTCCATGCTCTCTTCACTGTCGTTGGCTATCTCCTACCCTACAATTGCAGCTGCACCACACATGTTCGTTAATTCCTTTAAGAACGTCCTCGCCGTTGCAGTGGCCACAGAATATTCGTTCCCCCAGGCTGACGAGGTTAAGGAGTACCTGAAGGATCCTAGTAAATTTGCAGTAGCTGCTGTTGTTGCCGCACCTGCTACTGGTTCTGCTCCAGCTGCTGCCTCCAAGGAGGAGGAAAAGAAGGAAGAACCAGAAGAATCCGATGACGACATGGGCTTCAGTTTGTTTGATTAA 960 0.4917 MAVKLTKAQKKIAYDAKLCRLLDNYTQILVVAADNVGSNQLQNIRQGLRGDSVVLMGKNTMMKRSVKLHAESTGNKAFLNLVPLLVGNVGLIFTKGDVKEVSEVVAKYKVGAPARVGLIAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLSKLAIRPFSYGLVVVSVYDNGSVFSPAVLDLTDDDLLNMFADGVSMLSSLSLAISYPTIAAAPHMFVNSFKNVLAVAVATEYSFPQADEVKEYLKDPSKFAVAAVVAAPATGSAPAAASKEEEKKEEPEESDDDMGFSLFD* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1034 319 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 319 - -
Vra3g1034 319 PIRSF L10E 1 319 IPR030670 GO:0042254
Vra3g1034 319 Gene3D - 114 185 IPR043164 -
Vra3g1034 319 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vra3g1034 319 Pfam Ribosomal protein L10 8 108 IPR001790 -
Vra3g1034 319 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vra3g1034 319 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 319 - -
Vra3g1034 319 CDD Ribosomal_P0_L10e 9 185 - -
Vra3g1034 319 Gene3D - 6 209 IPR043141 -
Vra3g1034 319 MobiDBLite consensus disorder prediction 288 319 - -
Vra3g1034 319 MobiDBLite consensus disorder prediction 304 319 - -
Vra3g1034 319 Pfam 60s Acidic ribosomal protein 234 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1034 Vra-Chr3 10330800 10333147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1034 1 318 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.931 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1034 K02941 - gmx:100791968 501.13