Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1032 ATGGAGGGAAAGGAGCAAGATGTTTCATTGGGAGCGAACAAATTCTCAGAGAGGCAACCCATTGGGACTGCGGCTCAGAGCCAAGACGATGGAAAGGACTACCAAGAGCCTCCTCCGGCTCCACTATTTGAACCCTCCGAACTCACTTCTTGGTCCTTCTACAGAGCCGGAATAGCCGAGTTTGTGGCTACTTTTCTTTTCCTCTACATAACTATCTTAACCGTCATGGGTGTCAATAGGTCCGATTCCAAGTGCGCAACCGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGTATGATCTTTGCTCTCGTTTACTGCACCGCTGGAATCTCAGGGGGACACATAAACCCGGCTGTGACATTCGGACTGTTCTTGGCGAGGAAATTGTCGTTGACTAGGGCACTGTTCTACATGGTGATGCAGGTTCTGGGTGCTATCGTTGGTGCTGGTGTGGTGAAAGGTTTCGAGGGAAAAACCTTCTTCGGGAAACACAACGGTGGTGCCAACTTCGTTGCCTCTGGTTACACCAAGGGTGATGGACTGGGTGCTGAGATTGTTGGTACCTTCGTTCTTGTCTACACTGTTTTCTCAGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTTCCTATTTTGGCACCTTTGCCCATTGGATTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCAATCACTGGCACCGGTATCAACCCTGCTCGAAGTCTCGGTGCTGCCATCATTTTCAACAAAGATCTTGGCTGGGATGACCACGTATTGGATTTTCTGGGTTGGACCATTCGTTGGAGCCGCTCTTGCTGCTCTGTACCACCAAGTCGTAATCAGAGCCATTCCCTTCAAATCCAACTAATGAGATAA 882 0.5045 MEGKEQDVSLGANKFSERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCATVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAIVGAGVVKGFEGKTFFGKHNGGANFVASGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHVLDFLGWTIRWSRSCCSVPPSRNQSHSLQIQLMR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1032 293 Pfam Major intrinsic protein 47 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 Gene3D Glycerol uptake facilitator protein. 40 270 IPR023271 -
Vra3g1032 293 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Vra3g1032 293 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 268 - -
Vra3g1032 293 CDD MIP 55 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 SUPERFAMILY Aquaporin-like 47 260 IPR023271 -
Vra3g1032 293 TIGRFAM MIP: MIP family channel proteins 59 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g1032 293 MobiDBLite consensus disorder prediction 1 39 - -
Vra3g1032 293 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 268 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1032 Vra-Chr3 10312477 10313884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1032 1 293 Major Intrinsic Protein MIP AT2G45960 79.863 5.33e-173 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1032 K09872 - gmx:100791447 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1032 3 10312477 10313884 Vra6g0611 6 5535729 5537285 PCT