Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1031 ATGGCGTCGAGCGATCGCACAGTCTTACAATTCTCTTCATCATCTTCTCAAAGTTTCTCCGCAAAGGTTCATCCTCTCGTTATCTTCAACATCTGCGATTGCTACGTTCGGCGTCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTCGGATCCGTCCTTCCAGACGGAACCGTAGATATTCGCAATTCCTATGCTGTTCCGCACAATGAGTCCATTGAGCAGGTTGCTCTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAGAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACCGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACAAAATCCCATACATTTGACTGTTGATACTGGATTTACAAATGGAGGTGGTACCATCAAAGCTTACGTGTCTAACAATTTATCCCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATCCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATTTGATATGCTCAAGGCAACTGCAGTTGACAAAATTCCTTCAGATTTAGAAGGGATGGAAGCATCGATGCAACATCTACTAGTCTTGATTGATGATATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCAGACAACAAAATCGGAAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAAGTGTCTCCTCGAGTTTTTGATAAGCTTGTGAATGATAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACAAGAACGCAGCTTAGCTTGGCCGAGAAGTTGAACACAGCTGCCCAAATTCTGTGA 861 0.4321 MASSDRTVLQFSSSSSQSFSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTGFTNGGGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPRVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1031 286 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 125 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra3g1031 286 Pfam Maintenance of mitochondrial structure and function 173 279 IPR024969 -
Vra3g1031 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Vra3g1031 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 11 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra3g1031 286 SMART pad1_6 20 151 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra3g1031 286 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 19 282 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vra3g1031 286 ProSiteProfiles MPN domain profile. 21 152 IPR037518 -
Vra3g1031 286 Gene3D Cytidine Deaminase, domain 2 7 187 - -
Vra3g1031 286 CDD MPN_eIF3f 22 279 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1031 Vra-Chr3 10306813 10310508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1031 2 286 Eukaryotic Initiation Factors Gene Family AT2G39990 75.601 1.27e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1031 K03249 - gmx:100811797 506.908