Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1030 ATGGAAGAGGGCATGTCAGATTTTTGTTTTAGAGGTGAAAATGTTGGTGGTAATAGAGGTAGTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACTGAACAGGCTAAGCTTCTGACTCAACTCTTCAGTTCTGGACTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCTAACCAGCTCAGTTTTTATGGTAAGATTGAGAGCAAAAATGTATTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAAAAGCGTCGCAAGGTTGATAAGGATGTCATTCGTACTGAAAACTCCATCTCCATGAACTTTTTCACGCAAAATTTTACGCAGCTTTATCACGATTCTGAGCCTGAGAAAGTGACTGAGACTCTTCAACTATTCCCCTTGAACTCTTTCGGTGAATCAGAATCAAATATGAAGGTTCATGCAAGTGACTGCAGGGATAATACAATGTTTACATACACAGAGGAAGAACAAATGAACCATCCACCATTAGATCTTCGCTTGAGTTTTATGTGA 531 0.4143 MEEGMSDFCFRGENVGGNRGSATGTKCGRWNPTTEQAKLLTQLFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKDVIRTENSISMNFFTQNFTQLYHDSEPEKVTETLQLFPLNSFGESESNMKVHASDCRDNTMFTYTEEEQMNHPPLDLRLSFM* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1030 176 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 163 - -
Vra3g1030 176 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Vra3g1030 176 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 163 IPR044555 GO:0003700|GO:0099402
Vra3g1030 176 CDD homeodomain 29 89 IPR001356 GO:0003677
Vra3g1030 176 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Vra3g1030 176 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Vra3g1030 176 SMART HOX_1 25 92 IPR001356 GO:0003677
Vra3g1030 176 Gene3D - 26 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1030 Vra-Chr3 10301915 10302947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1030 8 176 Wox Gene Family AT3G11260 53.763 3.01e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra3g1030 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1030 - - vra:106757015 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1030 3 10301915 10302947 Vra6g0612 6 5556627 5557676 PCT