Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1028 ATGGCTGTGATATCAAAATGCACTGTTGTTCCTCACCAAAACTCCACTCTCGGAGACCTAAAGCTCTCCATCTCAGATCTTAACATGTTTTTGGCTCACTACATTCAAAAGGGCTGTCTCTTCACCACCCCATCTCTCCCCTCTCACACTCTCATCCCTCACCTCATCAACGCGCTTTCTTGCACGCTCTCAATTTTTCCTCCTTTAGCTGGCCGATTCAAAACGAATGCCGACGGCCACGTCTATATCGCATGCAACGACGCTGGCGTTGACTTCATCCACGCCACCGCCACCGATCTCTCTGTCACCGACCTCCTGTCGCCGTCCGATGTCCACCCGGCCTTTAAGAAATTCTTCCCTTTCCACCACAAACTCAGTTACACCGCCCATTCCTCCCCCATCATGGCCATTCAGGTCACTCAACTCGCTGACGGTATTTTCATCGGTTGCGCCGTCTGCCATGCTGTTACCGACGGCTCCTCCTTTTGGAACTTCTTTAACACCTTTTCTGCAGTTTCTCGCGGAGGACTCATATGTCCCTCTAGGCTCCCGGATTTTCACCGGGAATCAATCCTCATGTCGAAAGTCGTTCTTCGAATGCCCCAAGAAATGAAGGTTACCTTCGATGTTGACTCGCCCTTTCGAGAGAGAATCTTCAGTTTCAGCCGTGAATCGATTCAGAAGTTGAAAGGCTCGGTGAACAACAGTAGAAAAATATTTGGAGGAGAGAAGGAGGGGGTGGAGGTTGAGTTAATGGCGAAGCTGAGCAATGACACAGAATTGAAAAAGGTCGCAGTGGGCCAAACAACAGAGATTTCTTCGTTTCAGGCCTTGTGCGCGCTCATGTGGCGTTGCGTGACTAGAGCGAGGAATTTGGAGAAGGGTAAAACGACGACGCTTCGAATGGCAGTTAATGTTCGGCAACGTTCGGAGCCTAAGTTGGGGGATTGTTACTTCGGGAATGCGATTCAAAGCATCGTGACGCATGCAGCAGTTGGTGACGTGGTATCCATGGACCTTGGCTGGTGTGCGGAACAGGTGCACAAGAGCGTGATCGCGTTCAGTAGTGATACGGTGCGTCGTAACGTGGAGAATTGGGAGCGTGAGCCCAAATGCTTCGAGTTAGGGAACCATGACGGTGCCACCGTGCAGATGGGAAGCTCTCCAAGATTTCCGATGTACGACAGCGATTTCGGGTGGGGACGGCCATTGGCCGTGCGAAGTGGTGGAGCTAACAAGTTCGATGGAAAACTGTCGGCGTTTCCCGGGAGAAATGGCGGTGGCAGCACCGATTTGGAAGTGGTTTTGGCGCCTGACACGATGGCGCGTCTGGAGTCTGATCCTGAGTTCATGATTTACGTGTGTGGACAATAG 1374 0.5167 MAVISKCTVVPHQNSTLGDLKLSISDLNMFLAHYIQKGCLFTTPSLPSHTLIPHLINALSCTLSIFPPLAGRFKTNADGHVYIACNDAGVDFIHATATDLSVTDLLSPSDVHPAFKKFFPFHHKLSYTAHSSPIMAIQVTQLADGIFIGCAVCHAVTDGSSFWNFFNTFSAVSRGGLICPSRLPDFHRESILMSKVVLRMPQEMKVTFDVDSPFRERIFSFSRESIQKLKGSVNNSRKIFGGEKEGVEVELMAKLSNDTELKKVAVGQTTEISSFQALCALMWRCVTRARNLEKGKTTTLRMAVNVRQRSEPKLGDCYFGNAIQSIVTHAAVGDVVSMDLGWCAEQVHKSVIAFSSDTVRRNVENWEREPKCFELGNHDGATVQMGSSPRFPMYDSDFGWGRPLAVRSGGANKFDGKLSAFPGRNGGGSTDLEVVLAPDTMARLESDPEFMIYVCGQ* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1028 457 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 2 455 - -
Vra3g1028 457 Gene3D - 1 208 IPR023213 -
Vra3g1028 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 2 455 - -
Vra3g1028 457 Pfam Transferase family 3 451 - -
Vra3g1028 457 Gene3D - 209 446 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1028 Vra-Chr3 10291219 10293121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1028 25 445 Monolignol Biosynthesis Gene Families AT5G48930 28.182 3.93e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1028 - - vra:106757796 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0613 6 5564355 5566214 Vra3g1028 3 10291219 10293121 PCT