Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1027 ATGTGTTCTCCTTGTGATTCACTGAGTGTGATCTCAAAATGCAAAGTTGTTCCTCAGAAAAACTCTACTATGGGAGATCTTAAACTCTCAATCTCAGACCTTAACATGCTCTTATGTCACTACATCCAAAAGGGGTGTCTCTTCACCACCCCATCTCTACCGTCACAAGCTCTCATTCCTCATCTCACCAAAGCACTATCTCACACCCTCTCCCTTTTTCCTCCCTTTGCAGGTCGCCTCAAAACTGATGTTGACGGCTATGTTTACATCACATGCAACGACGCTGGCGTCGATTTCATCCACGCTACCGCCAATAATATCTCCCTCGCCGACCTCCTGTCACCCTCCGATGTTCATCCAGCTTTTAAGCACCTCTTTCCTTTCCACCAAAAAATTAGTTACACAGCTCATTCCTCCCCTATCATGGCCTTTCAGGTCACCGAGCTCGCCGACGGTGTTTTCATAGGTTGTGCTGTCTGTCACGCCGTCACCGACGGTGCCTCCTTTTGGAACTTCTTTAACACTTTTGCAGCAATTTCTCGAGGAGAAACCGCTTGTCTCTCCAGGCTACCGGATTTTCGTCGGGATTCCATCCTCACCTCCAAGGTCGTGCTTCAACTTCCGAAAGAAATAAAGGCCACCTTCAACGTTGAAGCGCCATTTCGCGAGAGAATCTTCAGTTTCAGCCATGAATCAATCCAGAAGCTGAAAGCCTTAGTGAACAAACGTCCGATCATGTTCACGCCAGAGAACATTGATGTCGCGGATGAGACAATGGCGAAGCTGAACACTGACACACAACTGAAAACAGCTACAGAAGGCGTAAGGGGTGAAACAACAGAGATTTCTTCATTCCAATCGTTGTGCGCACTGATGTGGAAGTGCGTGACTAGGGCGAGGAATATGGAGAAGACTAAAGTGACGACGTTTCGAACTGCCGCTAATATTCGGCAACGCATGAAGCCCAAGTTGGGGGATTGTTACTTCGGGAATGCGCTTCAGAGCATTACCACGTGTGCAACAGTGGGTGATGTGGTGTTCAAGGACCTTCAATGGTGCGCAGAGCAACTGAGTCGGAGCGTGAAGGCGTTTGATAGCGCCACGGTGCAGCGTAATGTGGATAACTGGGAGCGTGAGCCAAAGTGCTACGAGTTAGGCAACCATGACGGCGCCACTGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTATGACAACGATTTTGGATGGGGGAGGCCCATAACGGTGCGGAGCGGCGGAGCAAACAAGTTTGACGGTAAAATGTCGGCGTTTCCTGGAAGAAATGGCGATGGCAGCGTCGATGTGGAGGTGGTTTTGGCGCCTGAAACAATGGCGCAACTCGAGTCCGATCCCGAATTCATGCTTTACGTGTCTGCCCAGTGCGTAGAGACACGTGTTTGA 1422 0.4986 MCSPCDSLSVISKCKVVPQKNSTMGDLKLSISDLNMLLCHYIQKGCLFTTPSLPSQALIPHLTKALSHTLSLFPPFAGRLKTDVDGYVYITCNDAGVDFIHATANNISLADLLSPSDVHPAFKHLFPFHQKISYTAHSSPIMAFQVTELADGVFIGCAVCHAVTDGASFWNFFNTFAAISRGETACLSRLPDFRRDSILTSKVVLQLPKEIKATFNVEAPFRERIFSFSHESIQKLKALVNKRPIMFTPENIDVADETMAKLNTDTQLKTATEGVRGETTEISSFQSLCALMWKCVTRARNMEKTKVTTFRTAANIRQRMKPKLGDCYFGNALQSITTCATVGDVVFKDLQWCAEQLSRSVKAFDSATVQRNVDNWEREPKCYELGNHDGATVQMGSSPRFPMYDNDFGWGRPITVRSGGANKFDGKMSAFPGRNGDGSVDVEVVLAPETMAQLESDPEFMLYVSAQCVETRV* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1027 473 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 465 - -
Vra3g1027 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 465 - -
Vra3g1027 473 Pfam Transferase family 9 461 - -
Vra3g1027 473 Gene3D - 212 456 IPR023213 -
Vra3g1027 473 Gene3D - 8 211 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1027 Vra-Chr3 10286107 10287964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1027 32 455 Monolignol Biosynthesis Gene Families AT5G48930 29.128 1.61e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1027 - - gmx:100792476 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1027 3 10286107 10287964 Vra6g0613 6 5564355 5566214 PCT