Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1026 ATGAAGGCACTTGGAGTGGCCTATATAAGTAGGACATATCCTGTGTGCTCTTTTCAAGAGAAGCAACCAAGTGGTGCATGGTATCTGGTATCTACAACAATGCCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCTTCCGATGATGCAATTACTGTCCTCTCAAAATGCACTGTTGTGCCTCACCAAAATTCCACACTAGGTGATCTCAAGCTCTCTATATCTGACCTTAACATGCTTCTCTCTCACTACATTCAAAAGGGCTGTCTCTTCACCACCCCATCTCTCCCCTCTCACACTCTCATCCCTCACCTCATCAACGCGCTTTCTCACACACTCTCCCTTTTCCCTCCCTTCGCCGGCCGTCTCAAAACTGACCATCATGGCTACGTCTACATCGCATGCAACGATGCTGGCGTCGACTTCATCCACGCCACCGCCGATCATATCTCCGTTACCGACCTCCTGTCTCCCTCCCATCTTCATCCAACCCTCAACCACTTCTTTCCTTTTCACCACAAAATTAGTTACACCGCTCATTCCTCCCCTATCATGGCCTTTCAAGTCACCGAGCTCGTTGACGGCCTTTTCATCGGTTGTGCTGTCTGCCACGCTGTCACCGACGGAGCCTCCTTCTGGAACTTCTTTAACACCTTCGCTGCACTTTCTAAAGGAGTAACCATATGTCCCTCCAGGCTCCCGGATTTTCGTCGGGATTCCATCCTCACCTCCAATATTCTGCTTCGGCTGCCAAAAGAAATCAAGGTGACCTTCAACGTTGACGCACCCATTCGCGAGAGAATCTTCAGCTTCAGCCGTGAGTCAATTCAGAAGCTGAAAGCCGTAGTGAATAATTGTGGGAAAATTTGTTGGTTGGAGAATGTTGAGTTGATGGGGAAGCTGAGCCACGATACACAAGTGAAAACGACGGAGATTTCATCGTTTCAATCGTTGTGTGCGCTGATGTGGCGGTCCGTTACAAAGGCGAGGAATCTGGAAGGGAGTAAAGTGACGACGTTTCGAATGGCAGTCAATATTCGACATCGCATGGAGCCAAAGTTGGGAGACCATTACTTTGGGAACGCGATTCAGAGCATTGCCACGTATGCAGAAGCGGGTGACGTGGTGTCTAGCGAGCTTGGATGGTGCGCGGAGCAACTGAACAAAAGCGTAAAGGCGTTCGACAGTGCCACAGTGTGCCGCAACGTGGAGAATTGGGAGCGTGAGCCAAAGTGCTTCGAGTTGGGGAACCACGATGGCGCCACTTTGCAGATGGGAAGCTCGCCCAGATTTCCGATGTACGACAATGATTTTGGATGGGGGCGGCCCCTCGCTGTGCGGAGCGGAGGAGCCAACAAGTTCGATGGCAAAATGTCGGCGTTTCCAGGTAGGAATGGCGGTGGTAGCGTTGATTTGGAGGTGGTTTTGGCGCCTCACACCATGGACAAACTTCTCTCGGATCCCGAGTTCATGTCATATGTCTCCGGTTAG 1488 0.506 MKALGVAYISRTYPVCSFQEKQPSGAWYLVSTTMPSSSSSSSSFSSDDAITVLSKCTVVPHQNSTLGDLKLSISDLNMLLSHYIQKGCLFTTPSLPSHTLIPHLINALSHTLSLFPPFAGRLKTDHHGYVYIACNDAGVDFIHATADHISVTDLLSPSHLHPTLNHFFPFHHKISYTAHSSPIMAFQVTELVDGLFIGCAVCHAVTDGASFWNFFNTFAALSKGVTICPSRLPDFRRDSILTSNILLRLPKEIKVTFNVDAPIRERIFSFSRESIQKLKAVVNNCGKICWLENVELMGKLSHDTQVKTTEISSFQSLCALMWRSVTKARNLEGSKVTTFRMAVNIRHRMEPKLGDHYFGNAIQSIATYAEAGDVVSSELGWCAEQLNKSVKAFDSATVCRNVENWEREPKCFELGNHDGATLQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGSVDLEVVLAPHTMDKLLSDPEFMSYVSG* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1026 495 Pfam Transferase family 50 490 - -
Vra3g1026 495 Gene3D - 252 485 IPR023213 -
Vra3g1026 495 Gene3D - 48 246 IPR023213 -
Vra3g1026 495 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 46 493 - -
Vra3g1026 495 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 46 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1026 Vra-Chr3 10281348 10283353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1026 74 480 Monolignol Biosynthesis Gene Families AT5G48930 28.140 3.64e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1026 - - vra:106757796 1003.82