Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1022 ATGGAATTCGAGACCCCATATCCAACTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGGGTCACTACACAGAATGGAGTAGAGAAGAGAATAAGCAGTTTGAACATGCCCTTGCCATATATGACAAGGATACCCCAGACAGATGGCTGAGGGTTGCGGCCATGCTCCCGGGAAGAAGTGTCTATGATGTGATAAAACAGTACAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGCAGGAAGGATTCCAATTCCTGGATATGTTACCTCTTCTTTCTCATTGGAGATGGTTGACAACCATTGTTATGATGCCTGCAGAAAGAAGCCTGCAACTGTCAGGAGTTCTGATCAGGAGAAGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGTAAAGGAGACTGGAGAAATATTTCTCGCAAATTTGTGATCACAAAGACTCCCACTCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAATACAACAAGAGGAGGCCTAGTATCCATGACATCACCATTGTTAATCTTACAACAGACCAAGGGAAGTTTAATGAATCTCACGTGCCCTCTGAGAAACTGAAGCTGAATAGCATGCCAAAAGTACAACTTGAATGGATAAATCGCCACAACAATATTGGTTCACTTATGGATTTCAATCCAAATTATATGTTGATGTCACCTTCATCTGGCATCGTATCTCCCAAGACCCTCAAATTGCAAGGTCTGGATTTCTATGAATGTGCTTTTCATAAGACTTATGCCAAGCTTAAAAATCCGGATTTCAACAAGGAAGCTATATTTGGTATTCAAGCACTGTCATGCCCGCTCTGA 891 0.413 MEFETPYPTCFMSNSNWFVQEGHYTEWSREENKQFEHALAIYDKDTPDRWLRVAAMLPGRSVYDVIKQYRELEEDVSEIEAGRIPIPGYVTSSFSLEMVDNHCYDACRKKPATVRSSDQEKKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKYYIRQKLSGGKYNKRRPSIHDITIVNLTTDQGKFNESHVPSEKLKLNSMPKVQLEWINRHNNIGSLMDFNPNYMLMSPSSGIVSPKTLKLQGLDFYECAFHKTYAKLKNPDFNKEAIFGIQALSCPL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1022 296 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vra3g1022 296 CDD SANT 126 170 IPR001005 -
Vra3g1022 296 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vra3g1022 296 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vra3g1022 296 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 280 - -
Vra3g1022 296 Gene3D - 125 176 - -
Vra3g1022 296 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vra3g1022 296 ProSiteProfiles Myb-like domain profile. 27 73 IPR001005 -
Vra3g1022 296 SMART sant 23 75 IPR001005 -
Vra3g1022 296 SMART sant 123 173 IPR001005 -
Vra3g1022 296 Gene3D - 20 86 - -
Vra3g1022 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vra3g1022 296 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 280 IPR043363 -
Vra3g1022 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vra3g1022 296 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Vra3g1022 296 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vra3g1022 296 CDD SANT 26 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1022 Vra-Chr3 10232953 10235083 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g1022 Myb_DNA-binding 7.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1022 - - gmx:100783469 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1022 3 10232953 10235083 Vra6g0617 6 5651002 5652842 PCT