Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1002 ATGGATACTGCTTGCAGATCCTCTCCCCATGTCTTCATAGTTCTGTGTTTTGCTTTATTTCTTCAACTATGTCACTCATCATCCCAACTCAAGAGCTACATTGTCTACACTGGCAATTCCATGAAGGATGAGGATTCTGCGTTGGCTCTTTATTCCAACATACTACAAGATGTTGCAGACAGCAATGCCGAGCCCAAGTCAGTGCAGCAACACTACAAACGAAGTTTCGGTGGCTTTGTTGCTAAGCTAACGGAAGAGGAAGCCAATAGATTGGCTAGGCATGAAAGAGTGGTAGCTGTCTTTCCCAATCAAAAGAAGCAACTCCATACAACAAGGTCATGGGATTTTATCGGCTTTCCACTAAACGTAGACAGAGCAAAAACTGAGAGTGATGTCATCATTGGAGTGCTTGACTCTGGAATCTGGCCAGAATCTAAGAGCTTCAGTGACGAAGGATTCGGTCCACCACCTAGTAAATGGAAGGGCACTTGCCAAAGTTCAAAAAATTTCACGTGCAACAATAAAATCATTGGGGCTAAGATTTACAAAGCTGATGGATTCTTTACCGATGATGACCCAAAATCTCCGTTAGACGTAGATGGTCATGGCACTCATACAGCATCGATAGCAGCAGGGAATCCAGTTAGTCAAGCAAGCATGTTAGGCCTTGCTCAGGGAACGGCAAGAGGTGGCGCGATAAAAGCGCGCATTGCTGTGTATAAAGTGTGTTGGTTATTTGATGGTTGTTCTGATGCAGACATACTTGCTGCATTTGATGATGCAATTGCGGATGGGGTTGACATAATATCAGTTTCTCTTGGAGGTTTCAGTGACGAAAACTACTTTAGAGATGGAATTGGCATCGGAGCATTTCATGCTGTGAGAAAAGGAGTGTTGACAGTAACTTCAGCAGGGAACAATGGTCCAAAATATTCCTCCCTGTCCAATTTTTTGCCTTGGTCAATTACTGTGGCTGCGACTACCATAGACAGAAAGTTTGTTACCAAGGTTGGATTAGGTAACAACATTACCTATGAGGGTACCTCGATAAATACATTTGACCTCAAGGGAGAGTTGTATCCTATAATCTATGGTGGAGATGCACCAAGCAAAGGCTCCGATTCATCGTCATCAAGGTTTTGCTTCATCGGTTCGTTGGACAAAAAATTAGTGGAGGGTAAAATTGTTCTGTGTGATAGCAGAAGCAAAGCGACAGGCCCTTTCGATGCCGGTTCTGTTGGGGCATTGATACAAGGTCAAAGTTTTAGAGATCTTCCTCCTACTCTTCCATTACCAGGATCTTACCTCCAATTGAAGGATGGTGCCTCTGTACTTGACTACATAAACTCCACGAGGACTCCAACTGCAACCGTATTTAAGACTGATGTGACAGAAGATACAATAGCCCCTGTTGTGGCCTCTTTCTCTTCAAGGGGTCCAAACATTGTTACACCCGAAGTTCTCAAGCCGGATTTAGTGGCTCCTGGAGTTGCCATTTTAGCTAGTTGGTCTCCAGTTTCTACTCCTTCTGATGTTGACGGTGACAACAGAACATTAAACTTCAACATCATTTCCGGAACTTCAATGTCTTGTCCACATGTTTCTGGGGCAGCGGCATATGTGAAGTCATTCCACCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGCTAAACAACTTAGTCCAAAGATTAACCTTTACGCAGAACTGTCATATGGGGCAGGCCAAATCGATCCTTCGAAGGCTGTGTACCCTGGTTTAGTATATGATGCTGGTGAAATAGACTATGTAAGGTTCTTATGTGGACAAGGGTATAGTACAAGGAATTTACAACTCATCACAGGAGACAACAGTAGCTGCTCCGAAGCAAGTTCAGCAAGGGATCTAAACTATGCCTCATTTGCACTTTTTTCCCCAATCTCCAAGTCGAAAAGAGTAAGTGGGAGTTTTAACAGGACTGTTACAAATGTTGGGTCAGCAACGTCGACGTATAAAGCTAAGGTGATTGGTCCTGCAGGACTCAAAATTGAAGCGAACCCGAGTGTTTTGTCATTCACTTCTCTTAACCAAAAGCTCTCATTTGTGCTCACCGTTGAGGGAACAATAAAGGAACCTATAGTATCAGCCTCTTTGACTTGGGATGATGGTAAATTCCAAGTTAGGAGCCCCATTGTTGTGTTTAACACAGTATAA 2205 0.4358 MDTACRSSPHVFIVLCFALFLQLCHSSSQLKSYIVYTGNSMKDEDSALALYSNILQDVADSNAEPKSVQQHYKRSFGGFVAKLTEEEANRLARHERVVAVFPNQKKQLHTTRSWDFIGFPLNVDRAKTESDVIIGVLDSGIWPESKSFSDEGFGPPPSKWKGTCQSSKNFTCNNKIIGAKIYKADGFFTDDDPKSPLDVDGHGTHTASIAAGNPVSQASMLGLAQGTARGGAIKARIAVYKVCWLFDGCSDADILAAFDDAIADGVDIISVSLGGFSDENYFRDGIGIGAFHAVRKGVLTVTSAGNNGPKYSSLSNFLPWSITVAATTIDRKFVTKVGLGNNITYEGTSINTFDLKGELYPIIYGGDAPSKGSDSSSSRFCFIGSLDKKLVEGKIVLCDSRSKATGPFDAGSVGALIQGQSFRDLPPTLPLPGSYLQLKDGASVLDYINSTRTPTATVFKTDVTEDTIAPVVASFSSRGPNIVTPEVLKPDLVAPGVAILASWSPVSTPSDVDGDNRTLNFNIISGTSMSCPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKQLSPKINLYAELSYGAGQIDPSKAVYPGLVYDAGEIDYVRFLCGQGYSTRNLQLITGDNSSCSEASSARDLNYASFALFSPISKSKRVSGSFNRTVTNVGSATSTYKAKVIGPAGLKIEANPSVLSFTSLNQKLSFVLTVEGTIKEPIVSASLTWDDGKFQVRSPIVVFNTV* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1002 734 CDD Peptidases_S8_3 106 561 IPR034197 -
Vra3g1002 734 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Vra3g1002 734 PRINTS Subtilisin serine protease family (S8) signature 198 211 IPR015500 -
Vra3g1002 734 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
Vra3g1002 734 ProSiteProfiles Serine proteases, subtilase domain profile. 113 587 - -
Vra3g1002 734 Gene3D - 604 732 - -
Vra3g1002 734 CDD PA_subtilisin_like 337 458 - -
Vra3g1002 734 ProSitePatterns Serine proteases, subtilase family, serine active site. 526 536 IPR023828 -
Vra3g1002 734 Pfam Fibronectin type-III domain 632 730 IPR041469 -
Vra3g1002 734 Gene3D Peptidase S8/S53 domain 131 600 IPR036852 GO:0004252|GO:0006508
Vra3g1002 734 Gene3D - 330 465 - -
Vra3g1002 734 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 731 IPR045051 -
Vra3g1002 734 SUPERFAMILY Subtilisin-like 108 591 IPR036852 GO:0004252|GO:0006508
Vra3g1002 734 PANTHER PUTATIVE-RELATED 21 731 - -
Vra3g1002 734 Pfam Subtilase family 130 568 IPR000209 GO:0006508|GO:0008236
Vra3g1002 734 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 109 IPR037045 -
Vra3g1002 734 Pfam Peptidase inhibitor I9 32 109 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1002 Vra-Chr3 10067153 10071482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1002 33 731 Subtilisin-like Serine Gene Family AT3G46850 49.441 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1002 - - gmx:100795826 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1002 3 10067153 10071482 Vra6g0644 6 5977332 5981460 PCT
Vra6g0646 6 6007548 6016193 Vra3g1002 3 10067153 10071482 PCT