Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0997 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGCAGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCAAATAGAGGAAGGGGTGGTGGTGGTCATCTAGAGCAACCTGAAGAGGAAAACATGGCTTGGCCAGCTCCATCTAGATCACGGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGGTATAGATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAAGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATCGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTCAAGGAACTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGTATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGAAATGAAAGATACTGTAGATTAGAAGACGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAATATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACTAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGGCGGCCAAGAATTGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGTTGATTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCTTACATGTGGCTTGAGGCAGAGGTGATGTCGTGTTCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCCTCCTCCTTCCCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAAGCTGTGAATAAGTATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1536 0.4355 MAPPSDINHLSHPCIYAGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGGHLEQPEEENMAWPAPSRSRDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCSRTMPSTSSASSSSSFPHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0997 511 MobiDBLite consensus disorder prediction 45 81 - -
Vra3g0997 511 Pfam Protein DA1 296 506 IPR022087 -
Vra3g0997 511 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 511 - -
Vra3g0997 511 ProSitePatterns LIM zinc-binding domain signature. 148 181 IPR001781 -
Vra3g0997 511 ProSiteProfiles LIM domain profile. 146 205 IPR001781 -
Vra3g0997 511 PANTHER PROTEIN DA1-RELATED 2 21 511 IPR045218 -
Vra3g0997 511 CDD LIM_DA1 148 199 - -
Vra3g0997 511 Gene3D Cysteine Rich Protein 142 205 - -
Vra3g0997 511 Pfam LIM domain 148 200 IPR001781 -
Vra3g0997 511 MobiDBLite consensus disorder prediction 64 81 - -
Vra3g0997 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 172 - -
Vra3g0997 511 SMART lim_4 147 198 IPR001781 -
Vra3g0997 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0997 Vra-Chr3 10033589 10038927 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra3g0997 DA1-like 1.8e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0997 - - gmx:100798829 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0997 3 10033589 10038927 Vra6g0655 6 6074581 6079481 PCT