Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0994 ATGAAGGCACTGATTTTGGTTGGAGGTTTTGGAACGAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTCAAGGCCATTGGAGTCAATGAAGTGGTGCTAGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGAATTTGAGGCAAAACTTGGCATCAAAATCACTTGTTCTCAAGAAACTGAACCACTGGGTACTGCTGGCCCCTTGGCTCTTGCGAGGGATAAACTGATAGATGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGAAATGATTGCATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCGTCAAAATATGGTGTGGTTGTAATGGACGAGACTACTGGACAGGTTGAGAAATTTGTAGAGAAACCAAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCGGTTTTGGATCGAATTGAACTGAGACCTACTTCTATCGAGAAAGAGGTGTTTCCAAATATCGCAGCAGCGAAAAAGCTATATGCAATGGTCCTGCCAGGATTTTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGTCTGACACTTTACCTGGACTCACTGAGGAAAAACTCTCCTTCTAAACTGGCCAGTGGTCCACATATTGTGGGAAATGTCATTGTACACGAAACTGCTGAGATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCAATCGGTCCTGGCTGTGTCGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACAGTAATGCGAGGAGTTCGGATTAAAAAGCACTCTTGCATATCCAGCAGTATCATTGGATGGCATTCCACCGTAGGGCAATGGGCCCGTGTGGAGAATATGACCATCCTTGGAGAAGATGTCCATGTTTGTGATGAAGTTTACAGCAATGGTGGTGTGGTTTTACCTCACAAGGAGATCAAGTCAAACATTGTGAAGCCAGAGATAGTCATGTGA 1086 0.4448 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIAFHKAHGGEASIMVTKVDEPSKYGVVVMDETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPNIAAAKKLYAMVLPGFWMDIGQPRDYISGLTLYLDSLRKNSPSKLASGPHIVGNVIVHETAEIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKKHSCISSSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSNIVKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0994 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Vra3g0994 361 Gene3D Hexapeptide repeat proteins 238 359 - -
Vra3g0994 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Vra3g0994 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Vra3g0994 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Vra3g0994 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Vra3g0994 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Vra3g0994 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0994 Vra-Chr3 10001045 10005004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0994 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.618 3.52e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0994 K00966 - gmx:100818016 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0994 3 10001045 10005004 Vra6g0663 6 6140083 6143156 PCT