Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0992 ATGGAGTTCACCACCAGACCCTTCTTTTTGGCAATTATGCTGCTTATGCTATCATGCGCCCCGCACGTGTCCCCCGCCACACCGTGTCCCGCGTGCGGCAACACCACGGTGCCGTTTCCCCTCAGCACCACCTCCACATGCGGCGATCCGCTGTACAAAATTCGGTGCAGCTCCGGCACACTCATCTTCGACACGCTGAACAACTCGTACCCGATCGAGTCCATCGACGCGAAATCGCAGCGCCTTGTGATACGGCCCGCTGCGCTCGTGCAGAACACGTGCGTCTCCACCGATAAGGTGCACCAGGGGATCCAGCTCAACAGCACCCTCCCCTTCAACATCACCAGTTCCAACACCATCGTCTACCTCAACTGTACCTTCATGCTCCTCCAGTCCCCCCTCAACTGCTCCGCAGCCAGCGCCTGCAACGCCTACATCAATGCCACCGCCTCCGCTTCCGCCTGCCAGAGCGGCCTCTGCTGCACCTATCGCACCGGCGGCTCCAGCAACTCCTATATGATTCGCGTAAGAGACTCTGGTTGCAGCGCCTACTCCAGCTTCGTTAACCTCAACACGGCTCAACCTGTGAGCCGCTGGCCCGAACCAGGTTTGGAGATTCAGTGGCTCTCGCCCAAAGAAACCGTTTGTGGGTCCCAGGAGGATTGCGACTCTGCCACGTCGACTTGTGGGCCCGACGCCTCCTCTACGAGCGGGATCAAAAGGTGCTTCTGTCACGACGGACTCGTGTGGGATCCCATCCAAGGGGTGTGCGCTAAAAAAATTACATGCCAGAACCCAGATGGTTGTGGGGATTCAACTAATAAAAAGGTCATAATCGCAGGTTCAGTATGTGGGGCTGGAGCAGCAATCATCCTTGCCATCATTGCCTTTCTATTCTACAAACGCCACAAGCGCATCAAAGAAGCACAAGCCCGGCTAGCCAAAGAGCGTGAAGGAATTCTGAATGCCAGTAATGGGGGAAGAGCCGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAATGACTTCTCCAATGACCGACTACTTGGTGTCGGGGGCTATGGTGAAGTTTACAAGGGCTTTCTTCAAGATGGTACTGCTGTGGCTGTCAAGTGTGCCAAGCTTGGCAACCCTAAAGGCACCGATCAAGTCCTTAATGAGGTTCGCATATTATGCCAAGTTAACCACCGAAACCTTGTCGGTCTACTTGGTTGCTGCGTGGAACTGGAGCAACCTATTTTGGTTTATGAGTTCATAGAAAATGGTACCGTTCTTGACCACTTGCAAGGTCAAATTCCTAAGGGCCGTGGTTTGCTTAGTTGGACTCATCGCCTTGAAATTGCACGTCAGACTGCTGAGGGTCTTGCTTACCTTCACTTCATGGCCGTGCCTCCGATCTACCACAGAGATGTCAAGTCTAGCAACATTCTGCTAGATATCAATCTGAATGCCAAGGTTTCAGATTTTGGGTTGTCTAGGTTGGCCCAGACAGATATGAGTCATATCTCCACTTGTGCTCAGGGGACCCTTGGGTACCTTGATCCTGAGTATTATAGAAACTTCCAATTGACTGAGAAGAGTGATGTTTACAGTTTTGGAGTGGTGCTTCTTGAGCTTTTGACAGCTCAGAAAGCAATAGATTTTAACAGGGCACCCGATGATGTGAACTTGGCAATTTATGTTCATAGAATGATGGAGGAGGAACAGTTGATGGATGTCATTGATCCAGTGTTGAAGAATGTAGCCACCACTATAGAGCTAGAGACTATGAAGGCAGTGGCATTTCTGGCATTGGGCTGCTTGGAGGAAAAGAGACAGAACCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATGTCATCAGTATTGCCTCAGCAAAGGTAGTGTAG 1899 0.5129 MEFTTRPFFLAIMLLMLSCAPHVSPATPCPACGNTTVPFPLSTTSTCGDPLYKIRCSSGTLIFDTLNNSYPIESIDAKSQRLVIRPAALVQNTCVSTDKVHQGIQLNSTLPFNITSSNTIVYLNCTFMLLQSPLNCSAASACNAYINATASASACQSGLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNTAQPVSRWPEPGLEIQWLSPKETVCGSQEDCDSATSTCGPDASSTSGIKRCFCHDGLVWDPIQGVCAKKITCQNPDGCGDSTNKKVIIAGSVCGAGAAIILAIIAFLFYKRHKRIKEAQARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSNDRLLGVGGYGEVYKGFLQDGTAVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTVLDHLQGQIPKGRGLLSWTHRLEIARQTAEGLAYLHFMAVPPIYHRDVKSSNILLDINLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNFQLTEKSDVYSFGVVLLELLTAQKAIDFNRAPDDVNLAIYVHRMMEEEQLMDVIDPVLKNVATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYVISIASAKVV* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0992 632 Gene3D Transferase(Phosphotransferase) domain 1 421 630 - -
Vra3g0992 632 PANTHER OS05G0318100 PROTEIN 20 629 - -
Vra3g0992 632 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 629 IPR045274 GO:0007166
Vra3g0992 632 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Vra3g0992 632 CDD STKc_IRAK 351 621 - -
Vra3g0992 632 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vra3g0992 632 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vra3g0992 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vra3g0992 632 SMART serkin_6 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0992 632 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Vra3g0992 632 SUPERFAMILY Protein kinase-like (PK-like) 329 619 IPR011009 -
Vra3g0992 632 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
Vra3g0992 632 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0992 Vra-Chr3 9992426 9995812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0992 18 631 Receptor kinase-like Gene Family AT5G02070 52.524 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra3g0992 PK_Tyr_Ser-Thr 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0992 - - gmx:100305415 1115.52