Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0987 ATGGCTGGGATTTGCTGTAGAGTTGTTGGAAAAGGTGACACTCCTACTCCTCTTGAAACAACATCTCGTCCTTCCACCCGCAGAGCTATGGATATCGTACCCTTGAAGTACATGGCTGACATGGCTGTGCCCGACTCTTCCCGAAAGCGTCCCAAGCTCGATCTCAATGACACTGATAATCAACTTCAAACTGACCGGGAATCCTCCGGAACCAAGGTTATGAAGAAGGATTCCCAATTCCTCAACAACGACCAAGACGACGATGATGACGATGTTTCAGACACTAAATCCCTGACAGACGAGGATGATGACTCTGAAGATGAAGAGTGTCCCAAGTATGGCGTCACCTCTGTCTGCGGCAGGAGGAGAGACATGGAGGACTCTGTTTCCTTGCGCCCTTTCTTCTCGCTTGAAGGCTTCCACTACTTTGCCGTTTTTGACGGTCACGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGAGGCTCCACGAGATTGTGAACGAAGAGATTCTGGATGGAGATGAGAGTATACAGTGGGGATCAGTGATGCATAACGGTTTTGCTCGCATGGATGAAGAGGTTTTTCGCCGGAGCCAGGGCAACCAGACTTTCAACTGTCGATGCGAGCTCCAGACTCCGCACTGCGACGCAGTTGGATCCACTGCTATCATCGCCATCCTCACTCCCGACAAAATTGTCGTCTCCAACTGCGGCGACTCCCGTGCTGTTCTCTGCCGTGCTGGAGTTGCCATTCCCCTCTCTTCGGACCACAAGGATAACCGTTTTTGGACCCGTTTTGTTCAGCCGGACCGTCCCGACGAATTGCTCCGAGTGGAATCCAAGGGAGGGCGTGTGATTTACTGGGACGGTGCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTACCTGAAGCCTTTCGTGATTTCGGAGCCCGAGGTGACTGTGATGGAGCGAAGTGATGCAGACGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGAAACTGCTTGTGGGGTGGTGAAGATGTGCCTGAAGTCGCAGAAGCCCCCTACTCCTCCGGGCTCTCCGGGTCATGGTTATGTGACTGCAGATGGCTCCGACCGTGGTTGCTCGGATGCCTCGATTCTGTTGACCAAGTTGGCTTTGGCAAGGCACAGTGCGGATAATGTGAGCGTGGTGGTGCTTGATCTGAGGAAGGATCAGGAACAAACTTCCACTTCCAGCTAA 1257 0.5251 MAGICCRVVGKGDTPTPLETTSRPSTRRAMDIVPLKYMADMAVPDSSRKRPKLDLNDTDNQLQTDRESSGTKVMKKDSQFLNNDQDDDDDDVSDTKSLTDEDDDSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSLEGFHYFAVFDGHGCSHVATMCKERLHEIVNEEILDGDESIQWGSVMHNGFARMDEEVFRRSQGNQTFNCRCELQTPHCDAVGSTAIIAILTPDKIVVSNCGDSRAVLCRAGVAIPLSSDHKDNRFWTRFVQPDRPDELLRVESKGGRVIYWDGARVLGVLAMSRAIGDYYLKPFVISEPEVTVMERSDADECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPGSPGHGYVTADGSDRGCSDASILLTKLALARHSADNVSVVVLDLRKDQEQTSTSS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0987 418 SUPERFAMILY PP2C-like 112 408 IPR036457 -
Vra3g0987 418 SMART PP2C_4 100 405 IPR001932 -
Vra3g0987 418 MobiDBLite consensus disorder prediction 43 61 - -
Vra3g0987 418 ProSiteProfiles PPM-type phosphatase domain profile. 112 407 IPR001932 -
Vra3g0987 418 MobiDBLite consensus disorder prediction 83 109 - -
Vra3g0987 418 PANTHER ALPHABET, ISOFORM E-RELATED 42 411 - -
Vra3g0987 418 CDD PP2Cc 112 407 IPR001932 -
Vra3g0987 418 Gene3D - 107 416 IPR036457 -
Vra3g0987 418 MobiDBLite consensus disorder prediction 62 78 - -
Vra3g0987 418 MobiDBLite consensus disorder prediction 9 113 - -
Vra3g0987 418 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vra3g0987 418 Pfam Protein phosphatase 2C 112 368 IPR001932 -
Vra3g0987 418 PANTHER PROTEIN PHOSPHATASE 2C 37 42 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0987 Vra-Chr3 9917677 9919986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0987 87 413 PP2C-type Phosphatase Gene Family AT1G07430 53.652 7.13e-129 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0987 K14497 - gmx:100776356 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0987 3 9917677 9919986 Vra6g0669 6 6210004 6212055 PCT