Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0978 ATGGAGGAGTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAACTCACATATTCAACAACCATTTGGAGCCCGCATCAACAACACCAACTCATCATGGGAGGAAAGAGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCGTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTTCACAGAAGGGACAGGGCTAGGCTCAAACAAAGCCTTGTTCACCCTAATGAATCCTTTCAACATCTTCACAAAAATGATTGTTCCGTTGCAGCAAGCAAAGCCTCATCTTCTAGGCCCTCAACTATATCCACTCAAGAAAATTGTTATCATCAGCCTACCATGTCTCCTTACTCTTCTTCATTTAGCTGGGGACATCACCACATGGGGTCTTCTGATTCAGAACCAAAAGGGTCTGCAGTGAATGGAAGGGAACAGTTTTTAAAAGGTTCGGATTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTCGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 774 0.4264 MEESQYLLWFKRKQILNSHIQQPFGARINNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLVHPNESFQHLHKNDCSVAASKASSSRPSTISTQENCYHQPTMSPYSSSFSWGHHHMGSSDSEPKGSAVNGREQFLKGSDCNDYVETSLSVGQSSVFGQKLPIESYGDEAISYKRSKTSMPPLPVFHKPCSSDRHLTFHSAEFVLGLKPGMEDLDLELRLGKPQKVI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0978 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vra3g0978 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vra3g0978 257 Gene3D Classic Zinc Finger 55 122 - -
Vra3g0978 257 Pfam C2H2-type zinc finger 58 82 - -
Vra3g0978 257 PANTHER OS07G0101800 PROTEIN 1 257 - -
Vra3g0978 257 SMART c2h2final6 58 80 IPR013087 -
Vra3g0978 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Vra3g0978 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0978 Vra-Chr3 9844214 9845550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0978 20 90 C2H2 Transcription Factor Family AT2G37740 66.216 1.01e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0978 zf-C2H2_6 2e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0978 3 9844214 9845550 Vra6g0670 6 6221946 6222584 PCT