Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0975 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATCATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCCAATACTACTCCGACCAATAGCAGCAACAGCAACACAAACGCCAACACCAACACCACGGAGGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAACCAGAACCTCGTAAGCCATGAAGGTTCCGAGCCCGGAAGCGGTGGTCGGAGGCCACGTGGCAGGCCTCCCGGCTCCAAGAACAAGCCCAAGCCGCCGATTGTCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGCAGTGACGTAGCAGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCCGCGCCCGCAGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCCTTTTTGCCCTCTCCCTCGCCTCCTGGCGCCACCGGACTCTCCGTCTATTTGGCCGGGGGGCAGGGGCAGGTCGTTGGCGGCACCGTTGGTGGTTCTTTGGTGGCCTCCGGGCCGGTGATGGTGATCGCAGCAACATTCGCCAATGCTACTTATGAGAGGCTACCGCTGGAGGATGAACAAGGTGAAGAAGAAATGCAAGTGCAACAGCAATCGCAGCAGCAGCAACAACAACAACAATCTCAGGGTTTAGGTGAACAAGTTTCAATGGCCATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTTTGGGGAGCTGCTCCACCTCGTCCTCCACCTTCCTTCTGA 867 0.5767 MANRWWAGNVGIIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLVSHEGSEPGSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVGGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQSQQQQQQQQSQGLGEQVSMAMYNLPPNLLHNGQNMPHDVFWGAAPPRPPPSF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0975 288 MobiDBLite consensus disorder prediction 231 252 - -
Vra3g0975 288 Gene3D - 100 242 - -
Vra3g0975 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Vra3g0975 288 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Vra3g0975 288 MobiDBLite consensus disorder prediction 22 97 - -
Vra3g0975 288 CDD DUF296 101 184 IPR005175 -
Vra3g0975 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 283 - -
Vra3g0975 288 PIRSF ESCAROLA 12 287 IPR014476 GO:0003680
Vra3g0975 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 283 IPR014476 GO:0003680
Vra3g0975 288 MobiDBLite consensus disorder prediction 22 46 - -
Vra3g0975 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Vra3g0975 288 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0975 Vra-Chr3 9824471 9826874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0975 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.063 1.05e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0975 - - gmx:102667174 394.815