Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0972 ATGTGTGTACAGTTTTTTTGGTTGCTCTGCCTCGTGATGGCCAAAACCAGAACATTTCTGCTTGTGCTTCCTCTCTGTGTTTTGACCCTTCTTCTGGTCACAAACACTGCAAAGTGTCAAGAGTTTCTCTTCAACGGATTTGATGGTGCTTCTGCCACCAACATCGCCTTAAACGGAGGAGCAGTGATTGAGCACAAGGGCTTGCTTCGTTTAACAAACAACACTCAGAGAGTAATTGGGCACGCGTTTTATCCAACCCCAATTCAGTTCAAGCACAACAACAAAAGCTCTTCCACCGACCCAAAACTGCTGTCCTTTTCCACTGCTTTTGCGTTTGCAATCATCCCTCAGTACCCAAAACTCGGTGGGCACGGTTTTGCCTTCACCATTTCGCGCTCCAGGTCGCTGTCGGCCGCATACCCGAGTCAGTATTTGGGCCTCCTCAACCCAAAAGAATTGGGGAATTTCTCAAACCACCTTTTCGCAGTGGAGTTCGATACCGTCCAAGACTTCGAGTTCGAGGACATCAATGACAACCATGTTGGTGTCAACCTCAACAACATGGTATCCAACAAATCTGTTGAAGCTGCGTTTTTCCCTGAGGATTCAACCAATAAGCAAAACCTGAGTTTGAAGAGTGGTAAAGTGACACAAGCATGGGTTGATTATGATTCATCAACGAACCAATTGGAGGTTAGACTCTCCCCAACTTCCTCCAAACCCACTTCCCCAATTTTAAAATATAAAGTAGATCTGTCACCAATTCTCCAAGATTCCATGTACGTGGGGTTCTCTTCTTCGACAGGGTTACTCGCAAGCACACACTATATTTTGGGTTGGAGCTTCAAAATAAACGGAGAGGCCAAAACCCTTTCACTGCACAAGCTCCCATCTCTCTCTGCCTCCAACAAAACTCAAAAGCGCTTAAAATTAGGACTCTCCCTTTTATTGATTCTAACACTCGCCACAATTTCTCTGGCGTGTTACATATTCAGATGTATGAAGAACGCCGAAGTAATCGAAGCTTGGGAGAGGGACGTTGTTGGGCCACACAGATTCCCATACAAAGAGCTACACAAAGCCACGAAGGGTTTCAAAGACAAGAACCTCCTCGGGTTCGGAGGGTCCGGTCGCGTCTACAAAGGGGTTCTCCCGAAGTCCCAGATGGAAATCGCCGTGAAGCGAATCTCGCACGAATCGAAACAACGTATGCAGGAATTTGTGTCAGAAGTATCAACCATAGGAAGACTCCGACACAGAAATCTGGTACAGCTACTGGGTTGGTGTCGGAAACAAAACGACCTTTTACTTGTGTACGATTTCATGAGAAATGGAAGCTTGGACAGATACTTGTTCGATCAAGCGAGGAAAATACTAACGTGGGAGGAAAGGTTTAAGATAATAAAGGGAGTGGGTTTGGGGTTGGTGTATTTGCATGAGGAGTGGGAACAAACAGTGATTCACAGAGACGTCAAAGCGGGGAACGTTTTGTTGGATAGTGACATGAATGGGAGGTTGGGGGATTTTGGGTTGGCCAAGCTTTACGAGCATGGTGCCAACCCTAGCACCACACGTGTGGTCGGAACGATGGGGTACCTTGCACCTGAACTCACACGAACGGGGAAACCCACCACCAGTTCTGATGTTTACGCTTTCGGAGCGTTGTTGTTGGAGGTGGTGTGCGGGAGGAGGCCCATTGAGGTGAAGGCATTGCCGGAGGAGCTGGTGCTGGTGGACTGGGTCTGGGAGCGGTGGCGCATGGGGGCGCCGCTGGCGGTGGTGGACCCCAGGTTGGGTGGCGCGTTTGATGAGGTGGAAGTTTTGATGGTGATTAAAGTGGGGTTGTTGTGTTCCGCGGAGGCACCAGAGAAGAGGCCCAGCATGAGGCAGGTGGTGAGGTATTTGGAGAGGGAGGTGGCGCCGCCTCCGCCGGTGGTTTACGGGAAAAAAGATGGTGGTGGTGGCTACTACGAGGAGTTACATTCGTATTCGCCGTGGTCGTCGGTGGGTGATGACGTGGCGTCGTCTCTTTCACTTTCCGGTGGCCGGTAA 2052 0.4951 MCVQFFWLLCLVMAKTRTFLLVLPLCVLTLLLVTNTAKCQEFLFNGFDGASATNIALNGGAVIEHKGLLRLTNNTQRVIGHAFYPTPIQFKHNNKSSSTDPKLLSFSTAFAFAIIPQYPKLGGHGFAFTISRSRSLSAAYPSQYLGLLNPKELGNFSNHLFAVEFDTVQDFEFEDINDNHVGVNLNNMVSNKSVEAAFFPEDSTNKQNLSLKSGKVTQAWVDYDSSTNQLEVRLSPTSSKPTSPILKYKVDLSPILQDSMYVGFSSSTGLLASTHYILGWSFKINGEAKTLSLHKLPSLSASNKTQKRLKLGLSLLLILTLATISLACYIFRCMKNAEVIEAWERDVVGPHRFPYKELHKATKGFKDKNLLGFGGSGRVYKGVLPKSQMEIAVKRISHESKQRMQEFVSEVSTIGRLRHRNLVQLLGWCRKQNDLLLVYDFMRNGSLDRYLFDQARKILTWEERFKIIKGVGLGLVYLHEEWEQTVIHRDVKAGNVLLDSDMNGRLGDFGLAKLYEHGANPSTTRVVGTMGYLAPELTRTGKPTTSSDVYAFGALLLEVVCGRRPIEVKALPEELVLVDWVWERWRMGAPLAVVDPRLGGAFDEVEVLMVIKVGLLCSAEAPEKRPSMRQVVRYLEREVAPPPPVVYGKKDGGGGYYEELHSYSPWSSVGDDVASSLSLSGGR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0972 683 Pfam Protein kinase domain 365 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0972 683 CDD STKc_IRAK 371 637 - -
Vra3g0972 683 Gene3D - 39 302 - -
Vra3g0972 683 CDD lectin_legume_LecRK_Arcelin_ConA 41 286 IPR001220 GO:0030246
Vra3g0972 683 Gene3D Phosphorylase Kinase; domain 1 350 441 - -
Vra3g0972 683 SMART serkin_6 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0972 683 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 17 683 - -
Vra3g0972 683 PANTHER - 17 683 - -
Vra3g0972 683 SUPERFAMILY Protein kinase-like (PK-like) 348 643 IPR011009 -
Vra3g0972 683 ProSitePatterns Protein kinases ATP-binding region signature. 371 394 IPR017441 GO:0005524
Vra3g0972 683 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0972 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vra3g0972 683 Pfam Legume lectin domain 40 296 IPR001220 GO:0030246
Vra3g0972 683 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Vra3g0972 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 299 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0972 Vra-Chr3 9799089 9801578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0972 39 646 Receptor kinase-like Gene Family AT3G55550 61.951 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra3g0972 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0972 - - gmx:100787552 1040.41