Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0963 ATGGTTTTCACTTTGAGCAACAGAGTGCTATGCTTCATCATCATCACTTTTACATGTTTTTTGCAACTTGCAAAGCCTTCAAACTTGAGGGAAGACACGCTGCTCCAAGGCCATCCCCTTGCAGCAACCGACCGTTTGATTTCGCCTTCATCTTTATATACACTGCGTTTCTTTCAGCTTGATGATGGGTCTGAAGCTAGCACCAAATTCTACCTTGGCATATCAGCCAATAAGTACTATTACTATGTTTGGCTTGCCAACAGGGACAATCCAATCCACGATGATCCCGGAGTTCTCACCATTGATGAATATGGCAACCTCAAAATTGTGTCAAGTACTACCACTATGATGCTATATTCAGTTGAAGCAGAAAGTAACAAAAGTGTTAGAGCCTCTTTGCTAGATACAGGAAACTTTGTGCTTCATGAATTGAACTTAGATGGATCTGTGAAAAGGGTGTTATGGCAGAGCTTTGATTACCCCACAGACACTATTTTACCGGGGATGAAGCTTGGTTATGACAAGCACAGTGGCCACAAGTGGTCTCTAACAGCAAGGAGAAGTTACAAAACTCTTTGGTCAGGGTCTTTCTCTCTCAGCCTTGACCCCAAAATCAACCAATTGATTACTAGATGGAGAGGGGACATTATTTGGGCCAGTGGAGAGTGGAGAAATGGAAGTTTTAGCAACCTGATATCTTCATCACTTGACAGAGAGAAGTTCAACTTCACTTTCTTTTCAAACGAAAGTGTGACTTACTTTGAATATTCTCCAGTTTCTGGTTATCTGATCATGGGACCATTGGGTATAATCAATGCTACTGGTGTCTCTTACTCCTGTGTTGGCAGTGAGATTGTGCCTGGTTGTACAATGCCGCAGCCTCCCAAATGTAGGGAAGATGGTGATTTGTACTTGCCAAGTTGGAATAGTTTTGGAGCAATGTCAAGAAAAGGATACATATTTGATGAAAGAGAGAACATGACCATTTCTGATTGCTGGATGAGGTGTTTGAAAAATTGCTCCTGTGAGGCTTACACTTACGCATTCAAGGATGCAACTGGCTGTGAAATATGGAGCAGATACACATCACACTTTGTTGAGTCTAACTCCGGTGTTGGCCGTCCAATTTTCTTCTTTCTCAGCGAAACCAAAGCCAAAGGCAAGAAGAGGAGAATATGGATTGCTAGTGCTGCGGTTGGAGTTCTTCTCCTCATACTCTCATTCATTGCATCCTTTATCATGTTTGGGAGAAAACAAAAACAAAGAGTTGAAAATCGTAAGAAGCGAACAAATGTATTCTCTGACATTGGAGAAAATACTGAAATTTCTAATGCATGCGATGAAGGAAGAGAAGAATGGAATGAGAAGAGGACAGGCAGTGATACACATAAATTCGACTTTATAACCATTCTTCAGGCAACGGACAATTTCTCTTTGGCTAATAAGATTGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGGAAATTGGCAAATGGTGAAGAAATAGCTATAAAGAGACTTTCAAAAAGCTCGGGACAAGGATTGGTAGAGTTCAGAAATGAAGCTATGGTGATTGTGAAACTGCAGCACACTAACCTAGTGAGGCTTTTAGGATTTTGCATTGACAGAGAAGAAAGAATATTAGTCTATGAATACATGGCCAACAAAAGTTTGAATTTATACCTTTTCGATGCCAACAAAAGAAGTGTGTTAGATTGGAAGATAAGGTACAAAATAATAGAAGGAATTGCTCAGGGACTTGTGTATTTACATCAATATTCAAGATTAAAAGTGATACACAGAGATTTGAAGAGTAGTAATATTTTGTTGGACAATGAGTTAAATCCAAAAATATCTGATTTTGGAATGGCTCGGATACTTAAATGGACAATATTAGAAGAGAAAACAAATAGAGTGGTTGGAACATATGGTTATATGCCTCCAGAATATGCTCTGAGTGGAGTTATCTCAACAAAAACAGACGTATACAGCTTTGGCGTATTACTCTTAGAGATTGTGACTGGAAAGAAAAATATTAGTGAGGATTTTTCGCTGAATCTGATAGGATATGCATGGCAATTATGGAATGAAGGAGAAGCTCTAAAGCTGATTGACAAAATGGTGAATGGTTCATGCCATCAGATACAAGTTATACGATGCATTCATATAGGTTTGTTGTGCACTCAAGACAAAGCAAAGGATAGACCAAGTATGCTTGAGGTCATTTCTTTTATTTCAAATGAAAATTGTGAATTACCTTCACCTATACAACCACCACTTTATACCATCAAAACTCTCAAGGAGACAGACCAACATAAATATTACTCCAATAATGACATCACCATGTCAATCATATCTGCCAGATAA 2367 0.3908 MVFTLSNRVLCFIIITFTCFLQLAKPSNLREDTLLQGHPLAATDRLISPSSLYTLRFFQLDDGSEASTKFYLGISANKYYYYVWLANRDNPIHDDPGVLTIDEYGNLKIVSSTTTMMLYSVEAESNKSVRASLLDTGNFVLHELNLDGSVKRVLWQSFDYPTDTILPGMKLGYDKHSGHKWSLTARRSYKTLWSGSFSLSLDPKINQLITRWRGDIIWASGEWRNGSFSNLISSSLDREKFNFTFFSNESVTYFEYSPVSGYLIMGPLGIINATGVSYSCVGSEIVPGCTMPQPPKCREDGDLYLPSWNSFGAMSRKGYIFDERENMTISDCWMRCLKNCSCEAYTYAFKDATGCEIWSRYTSHFVESNSGVGRPIFFFLSETKAKGKKRRIWIASAAVGVLLLILSFIASFIMFGRKQKQRVENRKKRTNVFSDIGENTEISNACDEGREEWNEKRTGSDTHKFDFITILQATDNFSLANKIGEGGFGPVYKGKLANGEEIAIKRLSKSSGQGLVEFRNEAMVIVKLQHTNLVRLLGFCIDREERILVYEYMANKSLNLYLFDANKRSVLDWKIRYKIIEGIAQGLVYLHQYSRLKVIHRDLKSSNILLDNELNPKISDFGMARILKWTILEEKTNRVVGTYGYMPPEYALSGVISTKTDVYSFGVLLLEIVTGKKNISEDFSLNLIGYAWQLWNEGEALKLIDKMVNGSCHQIQVIRCIHIGLLCTQDKAKDRPSMLEVISFISNENCELPSPIQPPLYTIKTLKETDQHKYYSNNDITMSIISAR* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0963 788 CDD STKc_IRAK 483 742 - -
Vra3g0963 788 SMART blect_4 37 161 IPR001480 -
Vra3g0963 788 Gene3D Transferase(Phosphotransferase) domain 1 553 752 - -
Vra3g0963 788 Gene3D - 27 158 IPR036426 -
Vra3g0963 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 224 IPR036426 -
Vra3g0963 788 SMART serkin_6 477 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0963 788 PIRSF SRK 3 266 IPR024171 GO:0004674
Vra3g0963 788 PIRSF SRK 279 788 IPR024171 GO:0004674
Vra3g0963 788 Pfam PAN-like domain 325 360 IPR003609 -
Vra3g0963 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Vra3g0963 788 CDD B_lectin 46 161 IPR001480 -
Vra3g0963 788 ProSiteProfiles Bulb-type lectin domain profile. 31 154 IPR001480 -
Vra3g0963 788 Pfam Protein kinase domain 479 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0963 788 ProSiteProfiles PAN/Apple domain profile. 297 381 IPR003609 -
Vra3g0963 788 Gene3D Phosphorylase Kinase; domain 1 439 552 - -
Vra3g0963 788 Pfam D-mannose binding lectin 82 187 IPR001480 -
Vra3g0963 788 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 764 - -
Vra3g0963 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 80 764 - -
Vra3g0963 788 ProSiteProfiles Protein kinase domain profile. 477 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0963 788 SUPERFAMILY Protein kinase-like (PK-like) 461 765 IPR011009 -
Vra3g0963 788 SMART ntp_6 306 382 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0963 Vra-Chr3 9662105 9665401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0963 450 776 Receptor kinase-like Gene Family AT4G11480 54.381 3.53e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra3g0963 Pkinase 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0963 - - gmx:100782230 1276.92