Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0958 ATGGGTTGCTGCTTTAGTGCTCCTCCAAAGATCAAAGCCGAGAGCCCTCCACGTAATGGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGAATGATCCGAGTAGTTTAAGCGGCACGGTGTCGTCTTCATCTATGCTTCTAACTCCTCAGAATGAGGTTGAGATATTGGAAGCCAGCAATTTGAAGAATTTTGCATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTATGGTAGGTGAAGGTGGGTTTGGTAGTGTGTTTAAAGGGTGGATTGATGAGCATACACTTGCCCCTACTAAAGCAGGCACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAGNTAATTGGTTACTCCTTGGAGGATGATCACCGGATTCTGGTGTATGAATTTGTGGCCAAGGGTAGCTTGGATAATCACTTGTTTAGGAGGGCCTCTTACATTGAACCGCTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATTCTGCCAAAGGGCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATTCAGGGACTTCAAAACTTCTAACATCTTACTTGATTCTAATTATAATGCAAAACTGTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGACAAGAGTCATGTTTCTACAAGGGTGATGGGCACCTTTGGCTACGCTGCTCCTGAGTATATTGCAACAGGTCACTTAACGAAAAGGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTTATGTCAGGAAAACGTTCACTGGACAACAACAGGCCAAGTGGAGAGCATAATCTAGTTGAATGGGCGAAACCACTTCTGATAAACAAACACAAGATCTCCCAAGTCATGGATGCACGTATAGAAGGCCAATACTCTAAGAGAGAAGCAAANAGAATAGCTCACCTTGCACTTCAATGCCTCTCTACAGATCAAAAACTTAGACCAAACATANGTGATGTGGTGAGATCATTGGAACATCTTCAGGATTCCAACGACACACAAATAAATGGTCATAGCTCAAGCAGCAGTGCTACTCCTATTTCTAGTTTGTCTCCTTCCCCTCTTCGTACGTAG 1176 0.4269 MGCCFSAPPKIKAESPPRNGLNSKDGSKEENDPSSLSGTVSSSSMLLTPQNEVEILEASNLKNFAFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEHTLAPTKAGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKXIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIEPLSWNIRMKIALDSAKGLAFLHSDEVDVIFRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRSLDNNRPSGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAXRIAHLALQCLSTDQKLRPNIXDVVRSLEHLQDSNDTQINGHSSSSSATPISSLSPSPLRT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0958 391 MobiDBLite consensus disorder prediction 362 391 - -
Vra3g0958 391 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Vra3g0958 391 Gene3D Transferase(Phosphotransferase) domain 1 162 380 - -
Vra3g0958 391 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Vra3g0958 391 MobiDBLite consensus disorder prediction 1 43 - -
Vra3g0958 391 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Vra3g0958 391 SUPERFAMILY Protein kinase-like (PK-like) 53 366 IPR011009 -
Vra3g0958 391 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0958 391 PANTHER OS01G0588500 PROTEIN-RELATED 29 374 - -
Vra3g0958 391 PANTHER KINASE 1B 29 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0958 Vra-Chr3 9605696 9608807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0958 62 370 Glycoside Hydrolase AT3G07070 46.624 5.64e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra3g0958 PK_Tyr_Ser-Thr 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0958 - - var:108326804 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0958 3 9605696 9608807 Vra6g0697 6 6580215 6583259 PCT