Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0951 ATGGAGAGTCCCCATTCGCTCTCTCCCTCGTCTTCCTCCTCCTATTCCTCTGACGGAGTCACTTTCGACACGGAGGAGCCGCGGACACCGCTCGCCGTGCGCCGCGCCCTGCACCTCATCAACTCCGGCGAGCCCCACCTCTGCCTTCAAGCCGCTCGTGACATCCGCCGACTCACCAAGACGTCCCAACGTTGTCGGCGCCAACTGTCTCAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAATCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAGGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATAGTTAGTTTCCTCAAGTCTCAAAATGTAAATCTGCAGGAGTCTGCAACTGCATCATTGCTCACACTATCTGCCTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGGTCCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTTTCTAATTTATCAACACACCCTACTAATCTCAGTACCATTCTCGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAAGCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGACGAGGGCAGAACTGCCCTGACATCTGAGGAAGGCGGGGTTCTGGCAGTTGTAGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCAGGCCTTCTTGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTGTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTGAGACATTTACAACAAAGGGCTCTCGTCTGCACCCCAAGTGATCTTCCTATCGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4914 MESPHSLSPSSSSSYSSDGVTFDTEEPRTPLAVRRALHLINSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKINIVEAGALEPIVSFLKSQNVNLQESATASLLTLSASSTNKPIISACGAIPLLVEVLRDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKSCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0951 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Vra3g0951 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Vra3g0951 387 Gene3D - 20 370 IPR011989 -
Vra3g0951 387 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 370 - -
Vra3g0951 387 PANTHER U BOX DOMAIN-CONTAINING 11 370 - -
Vra3g0951 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Vra3g0951 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Vra3g0951 387 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0951 387 SMART arm_5 102 142 IPR000225 GO:0005515
Vra3g0951 387 SMART arm_5 184 226 IPR000225 GO:0005515
Vra3g0951 387 SMART arm_5 143 183 IPR000225 GO:0005515
Vra3g0951 387 SMART arm_5 228 268 IPR000225 GO:0005515
Vra3g0951 387 SMART arm_5 61 100 IPR000225 GO:0005515
Vra3g0951 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Vra3g0951 387 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0951 Vra-Chr3 9548599 9552516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0951 50 310 U-box Gene Family AT2G23140 34.601 4.09e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0951 - - gmx:100780954 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0951 3 9548599 9552516 Vra6g0706 6 6663431 6666832 PCT