Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0950 ATGGCACTCGCCAAAGACCAAAACATTCCACATGATTCAACCATGAGCAGCAAGGTTCCAAACTGTGTTTTCAGTGAGGCTGTGGAAACTACCTCAGTGACCGTTCGTAGAGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAGATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGGCGAAGAAGAATCACTGATTAATTTCAAAGGGTACAGCAATCTCATGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTTCTTGGGAGAATAGTTTGCATCAAGGTCATAACCACTGGAATCAGCATAGTCCAAGAAGTAATAAAGACATGCGCCTGGTGCAGGATTCCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTCTACTCAGCACCAACTATCCCTAACGATAAGAGCCTCCACAAGTTAGGAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGTAAAACGCTAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAGGAGCTAGTGCCTAACGGCTCCAAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTAAAGTTTCTTCAACTTCAAGTGAAAGTGTTGGCAACTGATGAATTTTGGCCAGCGCAAGGTGGAAAACCTCCTGACATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG 1014 0.4398 MALAKDQNIPHDSTMSSKVPNCVFSEAVETTSVTVRRVNEYHKSVIEEEDGSQTTNGLSNDSGITHSPPLSGSGKGYTYKEKSYQLGEEESLINFKGYSNLMQAGESLLSFQHNRLVPNSCYSKDISQKEYCSWENSLHQGHNHWNQHSPRSNKDMRLVQDSNCFQTASGYSSMVDNAKEKQYGERSSGWLYSAPTIPNDKSLHKLGAREMVLQKRPSMGESMKAAKKQCSTESKTLKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDAIRSSQRERSLNSK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0950 337 SMART finulus 249 298 IPR011598 GO:0046983
Vra3g0950 337 MobiDBLite consensus disorder prediction 44 76 - -
Vra3g0950 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 327 - -
Vra3g0950 337 MobiDBLite consensus disorder prediction 50 72 - -
Vra3g0950 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 327 - -
Vra3g0950 337 Gene3D - 237 300 IPR036638 GO:0046983
Vra3g0950 337 MobiDBLite consensus disorder prediction 217 256 - -
Vra3g0950 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 303 IPR036638 GO:0046983
Vra3g0950 337 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Vra3g0950 337 CDD bHLH_AtIND_like 244 306 - -
Vra3g0950 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0950 Vra-Chr3 9531150 9533035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0950 75 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.615 1.13e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0950 HLH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0950 - - gmx:100810010 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0950 3 9531150 9533035 Vra6g0707 6 6676227 6677818 PCT