Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0948 ATGGGTTTATCCCAAGGCCCCTGCACTGATTCCAGGGACCTTTCCAATGACCAAACCTCTTCCCCCTTAGTTGTAGATCACTACTGTGACTACAACAAGCTCAAATTCAGAACCTTGCTCAGAAAAATGATCTGGGAATTCGGTCTTGCCTGTGTGGCCAACCCTTCCCGGCGCCGGAGGGGCTCCGAGAGGGGACTCAGCGATGGCAAGAAGACGAATTTGGAACACAACAAGGCGTGGTTGCTCGCGGAGTCTGGTGGGTGTGGAGCAGAATTGTCCAATGCTGACCCTCAATCGGTTCACTCCTCTTTCAGGTTCAGTTTCTGTTCTCAGGTTGAGTTGGAGTCCCTCAACATGAGTTCTTCCAGTGCTGCGACCGTTTTGATGGTTAATTTGGACAATGGGGTGAGTGAATCTCGCGCCAAGGAAATCAAATGGAGGAGAATGGAGTCCTTGGAGAAGAGCATATCCCCTGTGGCTCACTCCTTGATCAGGTTCTGCTATGGTGAAATTCTCTCTGCTACTAGGAATTTCTCCAAGGGGAGGGTGTTGGGGAGAGGGGCATTAAGCTGTGTTTTTAGGGGTAGAGTTGGCCTTTTGAGGACTGCTGTGGCAATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCCTTCTGCAGAGAGTTGATGATTGCTAGTTCTCTTCACAGTTCAAATGTCGTTCCCCTTGTGGGTTTTTGTATTGATCCCGAGGAGGGTCTGTTTTTGGTGTACAAGTATGTCTCAGGGGGCAGTCTGGAGCGCCACTTGCATGGAAGGAAGAAGGGTAGTTCACCTCTTCCTTGGTCTGTGAGGTACAAAGTTGCAATTGGGATTGCTGAAGCTGTGGCTTATCTGCATAGTGGGACTGAAAGGTGTGTTGTGCACAGAGATATTAAGCCCTCAAACATTCTGCTTTCTTCAAGGAAGACTCCCAAGCTATGTGATTTCGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACCGTCAAAGGAACATTTGGATATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCGGATAAGACTGATGTATATGCTTTTGGAGTGGTTTTACTGGAACTCATTACTGGCCGGAAGCCAATTGAGGCAAGAAGACCTTCAGGAGAAGAAAACTTGGTGTTATGGGCCAAACCTTTTCTACAGAAAGGGAAAGGTGCCATTGAGGAGTTGCTTGATCCTCAACTCAAGTGCAGTCTAAGATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGCTGCCTGTGTCACTAATGAAGAATCTCGGAGGCCTGGCATACGTGAGATTATTGCAATACTGAAGGGTGAAGAAGAGCCTCTTTTGTCCAGAAAAAAGAAATCCAGTTTTCTTGGAAATGGATGCGTGATTGATTGTTATTCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTAGCTATGCTAGGAGTTGCAGAGTTTGAGGATGATGACTATCTCTATGGTCGATAA 1545 0.4641 MGLSQGPCTDSRDLSNDQTSSPLVVDHYCDYNKLKFRTLLRKMIWEFGLACVANPSRRRRGSERGLSDGKKTNLEHNKAWLLAESGGCGAELSNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGVSESRAKEIKWRRMESLEKSISPVAHSLIRFCYGEILSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKESAKAFCRELMIASSLHSSNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGSSPLPWSVRYKVAIGIAEAVAYLHSGTERCVVHRDIKPSNILLSSRKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRPSGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLRFSNQMGRMIEAAAACVTNEESRRPGIREIIAILKGEEEPLLSRKKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVAEFEDDDYLYGR* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0948 514 PANTHER OS01G0750732 PROTEIN 1 512 - -
Vra3g0948 514 SMART serkin_6 178 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0948 514 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 512 - -
Vra3g0948 514 ProSiteProfiles Protein kinase domain profile. 178 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0948 514 Pfam Protein kinase domain 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0948 514 Gene3D Transferase(Phosphotransferase) domain 1 256 470 - -
Vra3g0948 514 Gene3D Phosphorylase Kinase; domain 1 137 255 - -
Vra3g0948 514 SUPERFAMILY Protein kinase-like (PK-like) 161 461 IPR011009 -
Vra3g0948 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0948 Vra-Chr3 9509078 9512442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0948 164 458 Trihelix Transcription Factor Family AT1G70460 43.098 9.03e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra3g0948 Pkinase 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0948 - - gmx:100786826 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0948 3 9509078 9512442 Vra6g0709 6 6704345 6707110 PCT