Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0941 ATGAAGAGGAATTTCCGAGACAACTGCTCCGCCGGAGGACCTGTCAAGGGTGACTGCTCCTCAATGCCCAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCGCCGCGTTGGGCTACAAGGTTCGTGCTTCTGACATGGCAGACGTCGCACAGAAGCTTGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTTGCTTCCGACACCGTTCACTACGACCCTACCGATCTCCATTCATGGGTCCAAAGCATGTTAGCCGAACTCAACCCCGAACCCACCAACACCATCCTCGATCCCTCCTCCTTCTTAATCGAAAACCCCTCCCACTCTTCCTCCATCCTCACCTCCAACTCACGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAATAGCCGCTTACCCTCCTCAAAACACCACAAACAACAACCCCACTGTTCACACCACCACTGCCACCACCCCCACCACCACCACCACCCCTAACACCAAAACCGTTGAAGAAATCGAAACCACCAGCAACAAGCGCCTCAAGGCTTCCCCAATTGAATCCTCAGAGTCCGCTTCGGAGCCCACGCGCCCTGTAGTCCTCGTTGACTCGCAGGAAGCCGGCGTTCGTCTGGTGCACACTCTCATGGCGTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCGGACGCACTGGTGAAGCACGTTGGCATACTGGCTTCGTCTCAAGCCGGCGCCATGAGGAAAGTGGCGTCGTACTTCGCCCAGGCCCTGGCGCGTCGAATCTACGGCATCTTCCCTGAGGAAACCCTCGATTCCTCCTTCTCCGACCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATTTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTTACCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAGGGGATGCAGTGGCCCGCCCTCATGCAGGCCCTCGCATTGCGCCCTGGCGGTCCCCCAACTTTCCGCCTAACCGGAATCGGGCCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGTTGGCCCAGTTAGCCCACACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTTGCAGATCTCGACCCAAACATGCTAGAGATCCGTGCCGGAGAAGCCGTCGCTGTCAACTCCGTCTTCGAGCTCCATCGCATGCTGGCCCGACCCGGATCCGTCGACAAGGTCATGGACACAGTGAAAAAGCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAAGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTTACTGAAGCCTTGCATTACTACTCGAGTCTCTTTGACTCGCTGGAGGGTTCTTCCACCTCCAACGGGTTGGGTTCGCCGAATCAGGATCTGTTGATGTCGGAGTTGTACCTTGGGAAACAGATATGCAACGTGGTGGCCTACGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTCTGAGCCAGTGGAGAGGAAGAATGGGCTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCTAACGCGTTTAAGCAAGCTAGTATGTTGCTGGCTCTATTCGCAGGCGGTGATGGATACAGAGTGGAGGAGAATAACGGCTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATCGCCACCTCCGCTTGGAAGCTTCCCGCGCCCGAGTCCTAG 1794 0.5786 MKRNFRDNCSAGGPVKGDCSSMPNGKAKMWEEDRHQQGGGMDELLAALGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLHSWVQSMLAELNPEPTNTILDPSSFLIENPSHSSSILTSNSRVFNDDSEYDLRAIPGIAAYPPQNTTNNNPTVHTTTATTPTTTTTPNTKTVEEIETTSNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILASSQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFTTAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAHTIGVQFEFRGFVCSSLADLDPNMLEIRAGEAVAVNSVFELHRMLARPGSVDKVMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSTSNGLGSPNQDLLMSELYLGKQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPAPES* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0941 597 Coils Coil 57 77 - -
Vra3g0941 597 MobiDBLite consensus disorder prediction 154 213 - -
Vra3g0941 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 592 IPR005202 -
Vra3g0941 597 MobiDBLite consensus disorder prediction 195 211 - -
Vra3g0941 597 SMART DELLA_2 42 115 - -
Vra3g0941 597 ProSiteProfiles GRAS family profile. 218 591 IPR005202 -
Vra3g0941 597 MobiDBLite consensus disorder prediction 1 26 - -
Vra3g0941 597 Pfam GRAS domain family 227 591 IPR005202 -
Vra3g0941 597 MobiDBLite consensus disorder prediction 155 188 - -
Vra3g0941 597 PANTHER DELLA PROTEIN GAI1-RELATED 21 592 IPR030006 GO:0003712|GO:0005634
Vra3g0941 597 Pfam Transcriptional regulator DELLA protein N terminal 42 109 IPR021914 -
Vra3g0941 597 Gene3D - 40 105 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0941 Vra-Chr3 9455736 9458190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0941 43 592 GRAS Transcription Factor Family AT3G03450 62.903 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra3g0941 GRAS 4.9e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0941 K14494 - gmx:100799695 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0941 3 9455736 9458190 Vra6g0721 6 6835500 6838056 PCT