Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0939 ATGGCTTCTGGAGACTTCATTAATAAATCCCTCTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCAGTTGAGGCATTGAATGACGGGAATGGTTCGAATAAAACATCAATTTCGAAGTACATAGAATCAAGGTACGGTGTGTTGCCTCCGGGCCACAAGGTACTGCTGAATGTACACCTTGCTAAAATGAGGGACAGTGGGGTGCTTGACTTTTGGAAGAATAACTACACCAAGCGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGTAGGCCACCCAAGCCCAAGGAACTTCTGCCTCCGGGCACTGTCCTGTCACCGCCCAGGCCCAGGGGCCGCCCCCCAAAGGGCCCAAGTGTCATGCAAAGGCAATCCAAAGCCACCGCTGAGAGTGGCAGGCCCAGAGGCCGGCCTAGGAAGATGGCGCGGCCAGCCGGAGGATTTGGGGGAACATCGGCTTCCTCGTTGAAGCCCAGCGCGAGGCCCAGAGGAAGGCCTCCGAAAGTGAAGCCCGAATTGATCTAA 528 0.5644 MASGDFINKSLSLPPYPEMILEAVEALNDGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDSGVLDFWKNNYTKRDPNAPPRRGRGRPPKPKELLPPGTVLSPPRPRGRPPKGPSVMQRQSKATAESGRPRGRPRKMARPAGGFGGTSASSLKPSARPRGRPPKVKPELI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0939 175 MobiDBLite consensus disorder prediction 74 175 - -
Vra3g0939 175 PANTHER HMG-Y-RELATED PROTEIN A 7 173 IPR031059 GO:0003677|GO:0005634
Vra3g0939 175 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra3g0939 175 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Vra3g0939 175 PANTHER HISTONE H1 7 173 - -
Vra3g0939 175 MobiDBLite consensus disorder prediction 81 95 - -
Vra3g0939 175 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra3g0939 175 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Vra3g0939 175 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Vra3g0939 175 PRINTS AT-hook-like domain signature 159 169 IPR017956 GO:0003677
Vra3g0939 175 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Vra3g0939 175 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Vra3g0939 175 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Vra3g0939 175 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Vra3g0939 175 Gene3D - 9 84 IPR036388 -
Vra3g0939 175 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra3g0939 175 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra3g0939 175 PRINTS High mobility group protein (HMGY) signature 122 141 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vra3g0939 175 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra3g0939 175 MobiDBLite consensus disorder prediction 96 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0939 Vra-Chr3 9431546 9432646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0939 14 98 Single Myb Histone (SMH) Gene Family AT1G72740 37.647 1.05e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0939 - - gmx:100803968 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0939 3 9431546 9432646 Vra6g0726 6 6901471 6902852 PCT
Vra6g0722 6 6852129 6853872 Vra3g0939 3 9431546 9432646 PCT