Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0935 ATGGGAAGACAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTTACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTCTTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTCAGGCCAGACCTCAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCTTCTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATCGATCCTGTTACCCACAAGTCACTTTCCATTACAACTGAGCAAAGCCAACCCAATCCGCCATTGCAAGAACCACAAGATCAGCAACAAGCTATCCAAGTTGAGGAAGACCCAAAATTTGAGCCTGAAAATGGGCAAAACAAGGAGCCAGAGAAGGCAGAGACTTCATTTGATCTATCAACCATCACCGAAGAAGCTAAGGAGGAAGACCAAATCATGATACCCCTTTTTGAATCGATAATGAATGAGTTGTTCACTGATGAAGTTCCCATCATAGAGCCCAGTGAGATATTAGTTCCGTCTGCTACTTCCGCTTCACCAACCACTACATCATCTTCAACGTCATCGTCTTCTTATTCAAATTCCCCCAACTTCTTTGAAGACCTGCTGCTCCCAGATTTTGACTGGTCCGATGATTACAATGATACTAAGATTGACAACAACAATAGCAGTGTGGCCTTGTGGGATGATGACTTGATTAGAAGTTGGAATATGCTTATTAATGATGATAGCGATGCTGACAGAAAGCAAGTGTTTGACACTTCTGCTAATCAGTACCCAAGACTCATCATGGATTCAGAATCTTGGGCATACGGGTTGCTTTGA 966 0.4327 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSITTEQSQPNPPLQEPQDQQQAIQVEEDPKFEPENGQNKEPEKAETSFDLSTITEEAKEEDQIMIPLFESIMNELFTDEVPIIEPSEILVPSATSASPTTTSSSTSSSSYSNSPNFFEDLLLPDFDWSDDYNDTKIDNNNSSVALWDDDLIRSWNMLINDDSDADRKQVFDTSANQYPRLIMDSESWAYGLL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0935 321 SMART sant 66 114 IPR001005 -
Vra3g0935 321 SMART sant 13 63 IPR001005 -
Vra3g0935 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra3g0935 321 PANTHER MYB TRANSCRIPTION FACTOR 1 292 - -
Vra3g0935 321 MobiDBLite consensus disorder prediction 220 240 - -
Vra3g0935 321 CDD SANT 16 61 IPR001005 -
Vra3g0935 321 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 292 - -
Vra3g0935 321 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vra3g0935 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g0935 321 MobiDBLite consensus disorder prediction 131 179 - -
Vra3g0935 321 Gene3D - 11 67 - -
Vra3g0935 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra3g0935 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra3g0935 321 MobiDBLite consensus disorder prediction 154 175 - -
Vra3g0935 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g0935 321 CDD SANT 74 112 IPR001005 -
Vra3g0935 321 MobiDBLite consensus disorder prediction 131 153 - -
Vra3g0935 321 Gene3D - 70 151 - -
Vra3g0935 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0935 Vra-Chr3 9390071 9392561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0935 1 293 MYB Transcription Factor Family AT1G66230 55.446 1.94e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0935 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0935 K09422 - gmx:100803624 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0730 6 6958442 6960790 Vra3g0935 3 9390071 9392561 PCT