Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0922 ATGGTATTGTCTTGGACTAGAAGAAATGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGGTAGCCGTGGTGGTGAGTTGGAGGTGGAGGTTGTGATCCCCAACCACTTCCGGTGTCCGGTGAGTTTGGAGCTGATGACGGACCCTGTGACTTTATCAACCGGCATCACCTACGACAGGGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAAACTTTGACAACATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGCGTTGAAAACAGCTCTTATGGGATTGAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTACGAGGTTTCTCAGACATGTACGAGGATCTTGTCGGCTTGTCGGCGCGGGGATGATAAAAAGTGCCAAGAGTTGGTTGGGAAGATTAAGGATTGGGGGAGAGACGAGAGGAACAGGAAGTGCATAATTGGGAATCGTGCTAGAACTGATGCTGGCAATGGTGCCGATGCAGTTCTTGGACATGCCTTCGATTGTTTCTCAAGCGGTGACTCTTTTCACACGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTGACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCCTGGTTTGGTTTCTAGAGGGGAAAGACCTTGCATCTAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGTATGTTCAAGAATTGGCCAGAGTTGGAAAAGTGGCTGAAGCTTTGGTTAAAATGATTAGGGAGCCTACTGGAAGTGCTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATCAGCTGAGAATAAAGGGGAAATTACTCAAAGATTTGTGGAGTTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGATAAAGGGGTGTGCGAGAAGGCACTTGGGATTTTGGATTGCGTTTGTGATATCCAGAAGGGGAAGGAGGTTGTTAAGAACAATGCTCTTACTCTGCCTCTTGTCGTTAAGAAGCTTTTCAGGGTGTCACCATTGGCTTCAAGTTTTGTTGTCTCTATTCTTAAGAAGAATTTTGACAAGAAGGAGGAGGGAGCTCTGATTGAGGCAGTTCAACTAGGGACTTTTCAAAAGCTCTTGGTTTTACTACAGGTTGGTTGTGATGATACCACAAAGGAGAATGCTACAGAGTTGTTAAAACTGTTGAACGGTTATAGGAACAAAGCGACGTGCACAGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4631 MVLSWTRRNVFRRAKKEKGQIQGGSRGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTNFDNIPNHAIRRMIQDWCVENSSYGIERIPTPRIPLSSYEVSQTCTRILSACRRGDDKKCQELVGKIKDWGRDERNRKCIIGNRARTDAGNGADAVLGHAFDCFSSGDSFHTHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCLVWFLEGKDLASRQSAALLLRQVYVQELARVGKVAEALVKMIREPTGSASTKACLATIFNLVSSAENKGEITQRFVELDLVSLLLEAIVDGDKGVCEKALGILDCVCDIQKGKEVVKNNALTLPLVVKKLFRVSPLASSFVVSILKKNFDKKEEGALIEAVQLGTFQKLLVLLQVGCDDTTKENATELLKLLNGYRNKATCTDSSSDFKYLKKSF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0922 446 SUPERFAMILY RING/U-box 28 112 - -
Vra3g0922 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 446 - -
Vra3g0922 446 SUPERFAMILY ARM repeat 124 426 IPR016024 -
Vra3g0922 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Vra3g0922 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Vra3g0922 446 PANTHER WDSAM1 PROTEIN 16 446 IPR045185 GO:0061630
Vra3g0922 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Vra3g0922 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Vra3g0922 446 Gene3D - 221 433 IPR011989 -
Vra3g0922 446 CDD RING-Ubox_PUB 40 82 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0922 Vra-Chr3 9247760 9249473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0922 28 446 U-box Gene Family AT5G37490 48.244 4.77e-125 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0922 - - var:108327887 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0922 3 9247760 9249473 Vra6g0749 6 7233674 7235314 PCT