Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0921 | ATGAAACAAGACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTGTGCAGGTCCTTGCAGTGACAACCTCATCAACTCTCCCCATGTCACAAAACCAATAGAATTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAATTTCAACAACAATGACTTGGTGGTTACAGATTCAACAGGACTCTCATTCTCAAGCACTACTAGCGAGAGCAACAACGATCCTCCCTCTCAGAGTACTCCCTCTCAAACCATGCCACGAGTCTTCTCTTGCAATTACTGTAACCGCAAGTTTTTGAGCTCTCAGGCTCTTGGAGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGAGCCTTGCGCATGGGGTTTTTCTCTGAGAGGTATGTCAGTCTTGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACATTCTTCACTGCACCACGGCTTTTCACCAACAATGAGACCTCCTGAGACGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTTTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTAATGGAGGCCATACTCATCAGAATTTCACACTGAGTGGAACCTCTAATTTGAGTTTTAATGGGGTGAATCATCCACCGGTTGACATAGAGAACTCAGCACCTGAGTTGACATTGAAACTTTGA | 786 | 0.444 | MKQDFDLEVVASAEYESEVSSQVASNISIQETCAGPCSDNLINSPHVTKPIEFHLHSDAISLDLTLNFNNNDLVVTDSTGLSFSSTTSESNNDPPSQSTPSQTMPRVFSCNYCNRKFLSSQALGGHQNAHKRERTLAKRALRMGFFSERYVSLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPETKSSARFEQGYVGFPIFLEEDEAELLWQGSYHQVPSNGGHTHQNFTLSGTSNLSFNGVNHPPVDIENSAPELTLKL* | 262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0921 | 261 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 110 | 130 | IPR013087 | - | |
| Vra3g0921 | 261 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 261 | IPR045320 | GO:0003700 | |
| Vra3g0921 | 261 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 135 | IPR036236 | - | |
| Vra3g0921 | 261 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 108 | 135 | IPR013087 | - | |
| Vra3g0921 | 261 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
| Vra3g0921 | 261 | Gene3D | Classic Zinc Finger | 84 | 149 | - | - | |
| Vra3g0921 | 261 | PANTHER | ZINC FINGER PROTEIN 3-RELATED | 1 | 261 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra3g0921 | Vra-Chr3 | 9240592 | 9243628 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra3g0921 | 106 | 261 | C2H2 Transcription Factor Family | AT1G66140 | 51.381 | 5.93e-45 | 150 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0921 | - | - | gmx:100815175 | 388.652 |
Event-related genes