Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0916 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCGAGCACTTCATCTTCCTCTTCTTTGATTTGCAACAACGGCACATCTGGTGGTGCCACCAATTATGAGGCTCGCAATTCAACCAGTACAAATTTCCCTTCTCAAGCTCACACTGAGCTTTCTTTGGGAAGGAATTTCAGTGGTGGAGGAAGAGGGGGTATTGAAGAACCACCACCACACAACAGCAACACCAGCATCAACCCTTATTATCAGACCCAACAACCTCATTTCCATCATCTTCACCACCATTCTAACACTGGGAATGCTTCAAAACCAGCAACAGCGACGACCACCACAAGTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAGGAGACAAGGATCATCACGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGTTCTTCTTCTTCTTCTTCTTTTACTTCGTCTCCTGCACCCTACTTTGCCGCAGCGGCAGGTGGCCCGGATCCCATGTCCTATTTGAGCTCAGGTGGGACCACCGTTGCGGCGGCCGCGGCTTATAGGGCTGCCACGGCCACAAGGTTTAATGGAATTTCTGGGGAGGCCTTCAAAAGTCATCATCCATTGCACCACCATCACTCATCGTCACACTACGGGGTTGGACTTGGAGGGTCTCATGAGGCCTCTTCGGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTGCCAACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGCACACTACACGCTCGATTCGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACGCCAAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTAAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATCTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAAAGAAGCCTTTCAGATCGACCGGTGCAACAAGATATGGATTACTCTTCGGCCAATACTCTATGGAGTAACTCTTCAAGCAATAGAGAACTATGGCAACAAAACAGTTCTAACGACATAAATGGTTTCCGACCACCGATCTTCCAGTCACAACAGATATCAGGAGGACATCAAATTCAGGATTGTGATTCAAGCCAACTGAAGAACAGCTTGTCAGGATCAGGAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACGTTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1470 0.4714 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNGTSGGATNYEARNSTSTNFPSQAHTELSLGRNFSGGGRGGIEEPPPHNSNTSINPYYQTQQPHFHHLHHHSNTGNASKPATATTTTSSSNHLSHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSSSFTSSPAPYFAAAAGGPDPMSYLSSGGTTVAAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGGSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDISPMGSSGGMRQFSDQRSLSDRPVQQDMDYSSANTLWSNSSSNRELWQQNSSNDINGFRPPIFQSQQISGGHQIQDCDSSQLKNSLSGSGNLECKNPSLEFTLGRPDWNGKGQA* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0916 489 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 489 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 8 36 - -
Vra3g0916 489 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 489 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra3g0916 489 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 354 IPR006447 GO:0003677
Vra3g0916 489 MobiDBLite consensus disorder prediction 82 98 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 356 466 - -
Vra3g0916 489 SUPERFAMILY Homeodomain-like 298 354 IPR009057 -
Vra3g0916 489 MobiDBLite consensus disorder prediction 1 36 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 110 126 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 257 276 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 64 126 - -
Vra3g0916 489 MobiDBLite consensus disorder prediction 382 466 - -
Vra3g0916 489 Gene3D - 300 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0916 Vra-Chr3 9200923 9206207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0916 1 486 G2-like Transcription Factor Family AT5G16560 38.641 2.32e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra3g0916 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0916 - - ccaj:109796302 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0916 3 9200923 9206207 Vra6g0753 6 7280766 7286643 PCT