Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0906 ATGGTGTTTGAACATGTTCCGATTCCACGCCATACACAGGAAAATCACAAAAGGTGTCGTGTGGAGAATCAAGTGGTAGAGTTGATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGAGAAATGCGGAGGGAGGGAAGCTGCCGAAGCAATGGCAAAGGAGGCTAAGAAGAATGACATGATGCTGTGTAGCTCTGGCATAGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACACGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACGCTAGCCCAAACTTCAGATGATCCCGGTGTTGATGTAGAGGAAGGAAAAAGGCAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACATGTGCAGCCATTGATGAAGAACTGAAGCAGCACCGCAAGATAGACTCGTTTTACAGCGGAACAACTGCCCTATCAATTATTAGACAGGGTGAACTCATTGTCATAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCAGATGAAGGAAGTTTGGTAGCGGTTCAACTAACAGTTGATTTCAAGCCCAATTTACCCCAAGAAGCAGAGAGAATAATTGAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTATGGTTGCCTGATGCAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACCCACAGAAATATAAGTGGTAGAGACCAGTTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCTGCTAAAAGGTTAGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGAAGGGGCATTGCCGTGGATGACATTTCAGCCATTTGCCTTTTCTTTCACTCTTCCTTTTAA 1158 0.4594 MVFEHVPIPRHTQENHKRCRVENQVVELMGHFSSMFNGLARSFSMKKGRKNEKCGGREAAEAMAKEAKKNDMMLCSSGIVHVDGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDTIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQTSDDPGVDVEEGKRQLYRFNVWKHSYLKTCAAIDEELKQHRKIDSFYSGTTALSIIRQGELIVIANVGDSRAVLATTSDEGSLVAVQLTVDFKPNLPQEAERIIECQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISGRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKRLVECAEHAWKRKRRGIAVDDISAICLFFHSSF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0906 385 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 29 384 - -
Vra3g0906 385 PANTHER ALPHABET, ISOFORM E-RELATED 29 384 - -
Vra3g0906 385 CDD PP2Cc 87 381 IPR001932 -
Vra3g0906 385 Pfam Protein phosphatase 2C 103 357 IPR001932 -
Vra3g0906 385 ProSiteProfiles PPM-type phosphatase domain profile. 88 381 IPR001932 -
Vra3g0906 385 Gene3D - 80 383 IPR036457 -
Vra3g0906 385 SUPERFAMILY PP2C-like 84 382 IPR036457 -
Vra3g0906 385 SMART PP2C_4 79 379 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0906 Vra-Chr3 9097744 9101187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0906 29 382 PP2C-type Phosphatase Gene Family AT3G05640 73.034 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0906 - - vra:106757085 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0906 3 9097744 9101187 Vra8g1474 8 31686159 31689101 PCT