Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0904 ATGACTGAATTATCGAGGACGAAGTCATCGCCGGTTCCATTGGGAACTCTGATTGGCCGTGAGATTCGAAATGGAAGAGTTGAAAAACCTTTCGTGAAGTATGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACGGATTGCCTCAGGGTTCCGGGGGATGCATCAACAGCGTTTTCTGTCTTTGCGATCTTTGATGGGCATAACGGGATATCTGCTGCTATTTTTGCAAAGGAAAGCTTGCTAAGTAATGTTTTGAGTGCAATACCCCAAGATATTAGCAGGGATGCATGGCTTCAGGCCCTTCCACGCGCACTGGTTGTTGGCTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCCGGAACGACAGCTACATTTGTTTTAGTTGATGGATGGACTATAACTGTCGCATCTGTTGGGGATTCACGCTGCATATTAGATACTCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAGAATGCGGAGGAAAGGGAGCGTGTGACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAACGAGGTCGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGACGTTGGGGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGACTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTAATATGGCTGCCCAGTCATGTCGGGGTCTGCCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGAAGCTCTAAGGTCAAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATCCCTTCGGACCTTCCTGTATTGCCACCAACTCCAAGAAAGAAACATAATATGCTAACTTCGCTTCTCTTTTTTGGGAAAAAGTCTGAGAAAACAGTGAACAAAGCTACCAATAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACTGAAAGGCTGGGTAAGGATTTTCCGCTTAATAAGAATTCTGGCATTTTCCGCTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGGCTTGTCGGTGAATTCTGGACCTTTTTTCTCTCCTGCATCGAACCCATGGGAAGGCCCATTCCTCTGCACAAATTGTCGGAAAAAGAAAGATGCCATGGAAGGAAAAAGGCCCAGCAAAACCACCCTTATAGCATAG 1284 0.4603 MTELSRTKSSPVPLGTLIGREIRNGRVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKESLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSNMAAQSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPTPRKKHNMLTSLLFFGKKSEKTVNKATNKLSAVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASNPWEGPFLCTNCRKKKDAMEGKRPSKTTLIA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0904 427 SMART PP2C_4 21 293 IPR001932 -
Vra3g0904 427 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 425 - -
Vra3g0904 427 PANTHER ALPHABET, ISOFORM E-RELATED 2 425 - -
Vra3g0904 427 CDD PP2Cc 41 295 IPR001932 -
Vra3g0904 427 ProSiteProfiles PPM-type phosphatase domain profile. 23 295 IPR001932 -
Vra3g0904 427 Gene3D - 32 299 IPR036457 -
Vra3g0904 427 SUPERFAMILY PP2C-like 36 295 IPR036457 -
Vra3g0904 427 Pfam Protein phosphatase 2C 61 278 IPR001932 -
Vra3g0904 427 SMART PP2C_SIG_2 48 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0904 Vra-Chr3 9074214 9077655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0904 1 425 PP2C-type Phosphatase Gene Family AT1G09160 77.176 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0904 - - gmx:100807886 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0904 3 9074214 9077655 Vra3g0904 3 9074214 9077655 ECH
Vra8g1261 8 28394139 28400208 Vra3g0904 3 9074214 9077655 ECH