Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0903 ATGGCAACTGAACCAGCTTTAACATTCTCTTTGGCTTCTGTGGTTGAAGAGGTTCTTCAACAGCATGCTAGTCGTTTAGACGCAAACTCCACATCCAGAAAAACCGAAGAAACCTCCTTGAGAAGGTATGAAGCAGCTGGTTGGCTACGGAAAACAGTTGGAGTTGTTCGAGGGAAAGACTTGCCAGCTGAGCCTTCTGAAGGAGACTTCAGGATTGGATTGCGTAGTGGGATTATCCTATGTAGTGTTCTTAACAAAATTCAACCTGGAACAGTGAAGGTAGTTGAAAAACCTAGTGATTCTGTTATTATTCCTGATGGAGCAACATCTGCATATCAGTACCAAGAAAATATAAAGAATTTTCTTGTGGCTATGGAGGAAATGGGGCTTCCTACCTTCGAAGTTTCTGATTTGGAACAGGGAGGAAACTCTGAGAGGGTAGTGGATTGTGTTCTAGAGCTAAAGTCTTATGCCGAACGAAAACTTGGAGGAAGTGCATCTGGGAAATATAGTGGGGTTGCGAATGCAAAGCCACCTATCTCTGCGAAACGAATTACGAGGAAAAACTCAGAACCATTCATGAAGACAATGAGTCCTTTGCCATCAGGGGATAGAGATGGTGGTTATATGAGTGATCCCGGACAAGATCGAAGCGAAAGGGCTTCTTTTTCCTTAAATTCACTGGTTCGACAATATTTGTCCGACAAAAATCCAGAAGAAATTCTCACTGCAGTGGAATCCTTGCTTAGCAAAGTCATGGAGGAATGTGAACATCACATGCAAATTCGATGTAAAATGTATAAAACAACTAGGGAAGATAAAGCACCGTGTGAAACTGAATGTTCAATTTCAGAAGCTGCTTCTATTAATGAAACGATGAAAGAAAAGGAAGATGAACATGCTGTACAGGAAGAGCATGATCTACAAGATAAACATGATGTAAAAGATGAACATGATGTACGAGATGAACATGATGTAAAAGTTGAGCTTGACATTCAAGATGAACACAAGGAACAAAATAAACGAGAGGACAGTTGTGAAAAGATGTGCAATGAACATGAAAAATCAATCGACAAAAAATCGATTTCGAAGCAGCAAACTATAGTTGCCCAACAAAATAGAAGCATCCAGGAATTGAAAAACATTGTCCATCAAACAAAACTAGGAATGCAATTGATGCAAAGTGAACACCAGAAGGAGATCATTAATCTAAGCAAGCACCTATACAGCCTAACCTGTGCTGCTTCGGGATACCATAAAGTTCTTGAAGAAAACCGCAAGTTATATAATGTAGTGCAAGATCTGAAAGGAAATATTAGGGTATACTGTAGAGTCCGACCTTTCTTGGGTGGTCAACCAAGTCATTATAGCTCTGTCGGTAACGTGGAAGATGGAAGCATCTCAATCATAACACCTTCCAAATACGGTAAAGAGGGAAAGAAGACATTTAATTTCAATAGAGCATTTGGTCCTTCTGCAACCCAAGGAGAAGTTTTTGCCGACACACAACCTCTTATTCGTTCTGTTTTGGACGGTTATAATGTCTGCATATTTGCCTATGGCCAGACGGGATCAGGAAAAACATTCACTATGTCTGGGCCAGATGAACTTAACGATGAGACCATAGGTGTCAACTATCGTGCACTGGGAGACCTTTTCTATCTCTCTGATCAAAGAAAAGGTACAATTTCTTATGAAATCTCTGTTCAGATGCTTGAGATTTACAACGAGCAAGTTAGGGACCTACTTATGCCCGATGGCGCTAATAAAAGGTTAGACATCCGCAATAGTTCCCTTAATGGCATCAACGTTCCAGATGCTAACATTGTTCGGGTTTCATGCACTTCTGATGTCATAAGTTTGATGAACTTGGGACATAAGAATCGTGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGGTCTCACAGTTGTCTTACGGTTCATGTTCAAGGAAAGAACTTGACATCAGGAGGCACAATTCGTGGTTGCATGCATCTGGTTGATCTGGCAGGAAGTGAGAGGGCTGATAAAACTGAGGCTACAGGGGATAGACTCAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCATTGGGAGATGTAATTTCTGCCCTTGCCCAAAAGAGTCCACATGTTCCCTACAGGAATAGCAAACTTACTCAGCTACTTCAAGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAACCCGAAGCTCTTGGAGAAACACTTAGCACACTCAAGTTCGCCGAACGAGTCTCCACTGTCGAACTCGGTGCAGCGCGAGTTAATAAAGACAATTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAGGAAGGAGAAGCAGAACAGTTTAATAATGGCAATGAAACACCTAAGCATAAATCATATGCATCTTCTCCTCCTATGCATCGGCCTTCCAGTGGTGGATCTCGTAGGCTATCAAAAGAAGATTCTAATGGCCTGGATGATCAGAAAAATGTTGCTTCAACGTTGAAAGGACAAAGCCTAGATCCCCATGACATGGGTGCCAATTCACCTCAATGGACAACTGTTCCAAGTGAAAGAAAGGAGGATGATAAAGAATCAATTTCTGGAGATTGGGGTGATAAGATTTCGATGAACAGAAATGACAGCATAACTAGTGATGATAGTGTTGTGGGAGCGTGGGAAGTAGAAAGCAAACAATCTTCTCCGAGGTTAAGTCTCAATTTTCTCTCAGAGCCTTCTAAAATATCCCTAGACAACTCCTCTCATAAAAAGGACAACCAAGAGAATGAAGATTTACGGAGACCCAGTTTTGATATGACTACCACAGATGAATCAGATGAACACGAGATTGCTACTGTAACTAGTGATTCTTCTGAGTCAGACTTGCATTGGCCACCACAAATACCTAAACCAATCACCATTTCCAGTGGATTAGGCATTAAAGCAAAGAAAAAAGCAAATCTCAGAACAATAAAGAACCCAGACAGCAGGAGTATGATCCCATCATTCATTCCTGCGCCCGTGCCTGTGCATGTGCCTGTGCCTGTGCCTGTGCCTGTTCCCGTCTCATCAAGGAAACAACAACCAGTTACTCAAGGAAGAAAGCTCCCAGGCTCTTCTGATGTAAGGAGAAGATTTGGGAACAGTGCCAAGTGA 3198 0.419 MATEPALTFSLASVVEEVLQQHASRLDANSTSRKTEETSLRRYEAAGWLRKTVGVVRGKDLPAEPSEGDFRIGLRSGIILCSVLNKIQPGTVKVVEKPSDSVIIPDGATSAYQYQENIKNFLVAMEEMGLPTFEVSDLEQGGNSERVVDCVLELKSYAERKLGGSASGKYSGVANAKPPISAKRITRKNSEPFMKTMSPLPSGDRDGGYMSDPGQDRSERASFSLNSLVRQYLSDKNPEEILTAVESLLSKVMEECEHHMQIRCKMYKTTREDKAPCETECSISEAASINETMKEKEDEHAVQEEHDLQDKHDVKDEHDVRDEHDVKVELDIQDEHKEQNKREDSCEKMCNEHEKSIDKKSISKQQTIVAQQNRSIQELKNIVHQTKLGMQLMQSEHQKEIINLSKHLYSLTCAASGYHKVLEENRKLYNVVQDLKGNIRVYCRVRPFLGGQPSHYSSVGNVEDGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDELNDETIGVNYRALGDLFYLSDQRKGTISYEISVQMLEIYNEQVRDLLMPDGANKRLDIRNSSLNGINVPDANIVRVSCTSDVISLMNLGHKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGGTIRGCMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVISALAQKSPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKAALARKEGEAEQFNNGNETPKHKSYASSPPMHRPSSGGSRRLSKEDSNGLDDQKNVASTLKGQSLDPHDMGANSPQWTTVPSERKEDDKESISGDWGDKISMNRNDSITSDDSVVGAWEVESKQSSPRLSLNFLSEPSKISLDNSSHKKDNQENEDLRRPSFDMTTTDESDEHEIATVTSDSSESDLHWPPQIPKPITISSGLGIKAKKKANLRTIKNPDSRSMIPSFIPAPVPVHVPVPVPVPVPVSSRKQQPVTQGRKLPGSSDVRRRFGNSAK* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0903 1065 PRINTS Kinesin heavy chain signature 512 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 PRINTS Kinesin heavy chain signature 634 651 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 PRINTS Kinesin heavy chain signature 665 683 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 PRINTS Kinesin heavy chain signature 714 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 MobiDBLite consensus disorder prediction 931 968 - -
Vra3g0903 1065 Pfam Calponin homology (CH) domain 42 159 IPR001715 GO:0005515
Vra3g0903 1065 ProSiteProfiles Calponin homology (CH) domain profile. 39 159 IPR001715 GO:0005515
Vra3g0903 1065 CDD KISc_C_terminal 436 766 - -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 796 899 - -
Vra3g0903 1065 SUPERFAMILY Calponin-homology domain, CH-domain 42 164 IPR036872 -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 291 327 - -
Vra3g0903 1065 Pfam Kinesin motor domain 444 763 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 Coils Coil 771 798 - -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 193 218 - -
Vra3g0903 1065 Gene3D - 24 187 IPR036872 -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 802 823 - -
Vra3g0903 1065 SMART kinesin_4 436 772 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 MobiDBLite consensus disorder prediction 1033 1065 - -
Vra3g0903 1065 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1024 - -
Vra3g0903 1065 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1024 - -
Vra3g0903 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 798 IPR027417 -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 870 884 - -
Vra3g0903 1065 ProSiteProfiles Kinesin motor domain profile. 438 764 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra3g0903 1065 SMART ch_5 41 157 IPR001715 GO:0005515
Vra3g0903 1065 Gene3D Kinesin motor domain 433 806 IPR036961 -
Vra3g0903 1065 MobiDBLite consensus disorder prediction 928 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0903 Vra-Chr3 9066632 9072883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0903 426 817 Calmodulin-binding Proteins AT5G65930 39.695 1.51e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0903 K10406 - gmx:100799535 1515.75