Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0901 ATGCGATTCGTTTCGGTATTAGTACGATTGGTAATGATGGATCTGAAGGAATGGTCTTCTCCAGAGCTCAACGAGAGCAAGAAATGCTGCGCCGATTGCAAAACCACCAAGACTCCTCTGTGGAGAGGAGGACCGGCTGGACCTAAGACTCTGTGCAACGCCTGCGGAATTAGGTACAGGAAGAGAGGGAGTTGTTCCAGGAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTGTGTTTGATGGCCCTGTCCTGTGGTTTTTTTACCATTCCTTCACTTACCGCATTCCAGGTAACCTAA 360 0.5028 MRFVSVLVRLVMMDLKEWSSPELNESKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQRWKMLGEEEQAAVCLMALSCGFFTIPSLTAFQVT* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0901 119 ProSiteProfiles GATA-type zinc finger domain profile. 24 63 IPR000679 GO:0006355|GO:0043565
Vra3g0901 119 Pfam GATA zinc finger 30 64 IPR000679 GO:0006355|GO:0043565
Vra3g0901 119 ProSitePatterns GATA-type zinc finger domain. 30 55 IPR000679 GO:0006355|GO:0043565
Vra3g0901 119 SMART GATA_3 24 75 IPR000679 GO:0006355|GO:0043565
Vra3g0901 119 CDD ZnF_GATA 30 65 IPR000679 GO:0006355|GO:0043565
Vra3g0901 119 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 64 - -
Vra3g0901 119 Gene3D - 24 91 IPR013088 GO:0006355|GO:0008270
Vra3g0901 119 PANTHER OS01G0976800 PROTEIN 19 63 - -
Vra3g0901 119 PANTHER OS01G0976800 PROTEIN 71 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0901 Vra-Chr3 9055301 9056097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0901 14 106 C2C2-Gata Transcription Factor Family AT5G49300 50.435 1.35e-28 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra3g0901 GATA 5.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0901 - - vra:106757446 244.202