Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0900 ATGTCGTATCGGCCGATAGCAAACTCCAGGACTGAGCTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCTGATGAAGGTCGGCGGCGGCGAGAGGATACCATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGCTTGCAGAAGAAGAGACGTGAGGGTCTCCAATCTCAGCAGATTCCTGCTTCAGCTCACTCCACTGCAATAGAAAAGAAGTTGGAACAGCTACCAGCCATGGTTGCAGGTGTTTGGACTGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGGTTTGTTGAGTTTTTAATGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAATACTAAAGTGGTAATTGATCATGGTGCTGTCCCTACTTTTGTAAAGCTTCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCACTGGGAAATGTTGCTGGAGATTCTCCTAGATGTCGAGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTAAATGAGCATGCAAAACTTTCTATGCTAAGAAATGCTACTTGGACACTCTCAAATTTCTGCAGGGGAAAACCGCAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCAGCTCTTGCCAATCTTATCCATTCAAATGACGAAGAAGTGTTGACTGATGCCTGTTGGGCACTTTCTTATCTTTCTGACGGTACAAACGACAAAATTCAGGGTGTAATTGAAACTGGTGTTTGTAGTCGGCTTGTGGAGCTTCTAACGCACATTTCCCCCTCAGTGCTTATTCCTGCCCTTCGTACTGTTGGAAATATTGTCACTGGAGATGATTTGCAGACCCAGGTCATCATCAACCATCAAGCTCTTCCTCGTCTCTTGAATCTCTTGACCAATAATTATAAAAAAAGCATAAAGAAGGAAGCTTGCTGGACTATATCAAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGAGGCTGGTCTAATTGCTCCTCTGGTCCATTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCAGGTGGATCTCATGAACAAATCAAGTTCCTTGTAAGTCAAGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAAGCTGAGAAAAACGTGAGTAATCCTGATGGTGTGAATCTATATGGCCATATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAACCTCCAGAGTCACGATAACACTGAGATTTATGAAAAGGCAGTAAAGATTCTTGAGACATACTGGACGGAGGAAGATGATGAAACTGTGCCTCCAGGGGATGCTTCTCAGTCAGGCTTCAACTTTGGTGGCCACGAATTTCCTTCTGTGCCTTCTGGTGGATTCAACTTTATTTAG 1599 0.4415 MSYRPIANSRTELRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASAHSTAIEKKLEQLPAMVAGVWTDDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPTFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIETGVCSRLVELLTHISPSVLIPALRTVGNIVTGDDLQTQVIINHQALPRLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIEAGLIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNVSNPDGVNLYGHMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWTEEDDETVPPGDASQSGFNFGGHEFPSVPSGGFNFI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0900 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Vra3g0900 532 SUPERFAMILY ARM repeat 13 501 IPR016024 -
Vra3g0900 532 PIRSF Importin_alpha 6 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vra3g0900 532 Gene3D - 74 497 IPR011989 -
Vra3g0900 532 Gene3D - 13 52 IPR036975 GO:0006606
Vra3g0900 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Vra3g0900 532 Pfam Atypical Arm repeat 458 503 IPR032413 -
Vra3g0900 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Vra3g0900 532 PANTHER IMPORTIN ALPHA 2 522 - -
Vra3g0900 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vra3g0900 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Vra3g0900 532 SMART arm_5 234 273 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 317 358 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 149 189 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 190 232 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 360 400 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 403 443 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 275 315 IPR000225 GO:0005515
Vra3g0900 532 SMART arm_5 106 147 IPR000225 GO:0005515
Vra3g0900 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Vra3g0900 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Vra3g0900 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Vra3g0900 532 MobiDBLite consensus disorder prediction 39 66 - -
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Vra3g0900 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0900 Vra-Chr3 9043145 9051077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0900 132 392 U-box Gene Family AT3G46510 24.138 1.67e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0900 K15042 - gmx:100798125 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0900 3 9043145 9051077 Vra8g1461 8 31535072 31540547 ECH
Vra3g0900 3 9043145 9051077 Vra3g0900 3 9043145 9051077 ECH
Vra7g2796 7 48215547 48219801 Vra3g0900 3 9043145 9051077 ECH
Vra3g0900 3 9043145 9051077 Vra8g1461 8 31535072 31540547 PCT