Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0896 ATGGTATCAAAAAGGAAATCTTTTGAGAGGCAACGCAGTGGCAAAGTTCCAATTCAGGACCATAAACGGAGCTATGGTGATACCAAACAACCGCCAATCAGTGGCCTGAGAAATGTGATCAACGCACTAGGGCTGAATGACCACTCATCCTATTTGGAAACTTTTGTGCGAAGAGTGGTAAGAGAGGAGTTGGAAAAAAAAATCCAGGACCAGGATCATCTATTTCCAAGAAAAAAGGTTAATGAGGCTGGCATATCCGGAGCCAAACGCTTTAAGTTGTGCTTTCTTAATAAGTTACCTAAGACAATTTATACTCGATCTAATATAAAAGCAGAAGACGAATCGCTTCTTCAAATTGCTCTATTTGATGTTAGAACCAAGTCTGTAGTAAAGGAGGGTCCTCTTTCCTCGGTAAAGATAGAGATCTGTGTTCTGAATGGTGAGTTCGGATCCGATGGCAGTGAGGAGTGGACAGAAGAGGAGTTCAAGTCCAATATCTCACGTGAAAGAGAAGGTAGAGAGCCACTTTTGATTGGAGAGAGGTTTATTACTCTTACAAATGGAGCTGCTTGTATCACTAAAATTGCCATATCTGACAACTCGAGATGGCAAAGAAGCAGAAGGTTCAGGATTGGAGTTAAATGTGTGCCACCAACTTCCATTGGAGAAAAGATTCAGGAGGGTAGAAGTGAGCCTGTTATTGTGAAAGATAACAGAGGAGAGTGCTATAAGAAACACTTCCCTCCATTATTGGATGATGAATTATGGCGTTTGAAGAAAATTGCCAAGAAAGGAAGAATCCAGAAGCAATTTTCTTTACATGGAATTCACACCGTGAAGGATCTCTTGCGGCGGTACATAACCAACGAACAATCACTGTATAAAATGCTTGACCTTCCAAAGAAGTCATGGTTAGCGATCACTGACCATGCCAAAACCTGTGTGATCGATGATTACAAGCTTTACGGCTATCACTCACAAGAACCGGAAATAGGCCTGCTATTCAATTCCATCTACATCCTCGTGGGAGTGACATTTGATTGGCAAAATTATTATTCACCGGATATTCTCACTCCCCATGATAAGCATTGGGTGGAAATAGTGAAGCAGCAAGCTTACAAAAATGTCAACAATTTGAAAATGATTGATGAAACTAAATTGAACAGTTTAGATCTAGACGGATGTCTAAAAAAAGCAAGACAGTCTGACACTCCAGATCAATGTCTGCAACACATGGACATCTCAACTGCACAAGGTCAAGCAGAAACATTCCCAGGTTATAGTCAACCATCTATGTCTACTTCATATACTGATGAAGGAATGCATAACGGCCAAATTTATGCCGATCCACAGCCCGGCACGAGAGAAATGCCGCATAACAGTTATGTGTTTGATGAATTTTCCTCTGAGATGTACAATGAAGAGGATAGTTGTCACTTTGACGGATCGTGTTTACCATTCCCTGAAGGTGGATATTCGATACAGAATGAAAGGTCAGATGTTGAATTCATATATGGTTGTCCTCCTTGGGCAACATGGGAACCAAAAAGTGGCATTTTCTTTGGTTCGTGTGATGGAGAAGAATGTAGCCGTTATTCTACTTTCACAAATTCTACTGTGGACATATCGAGTAGTGGCAAATCCAAAGCAGCGTGGTGTAAGATTGGTTTTGCTCTTAAATGGGTCATATCAGTGAAAAGGCATGCAACTGCCAAAAAGAATGCTCAGCTGTTTTACCATAACTAA 1746 0.4089 MVSKRKSFERQRSGKVPIQDHKRSYGDTKQPPISGLRNVINALGLNDHSSYLETFVRRVVREELEKKIQDQDHLFPRKKVNEAGISGAKRFKLCFLNKLPKTIYTRSNIKAEDESLLQIALFDVRTKSVVKEGPLSSVKIEICVLNGEFGSDGSEEWTEEEFKSNISREREGREPLLIGERFITLTNGAACITKIAISDNSRWQRSRRFRIGVKCVPPTSIGEKIQEGRSEPVIVKDNRGECYKKHFPPLLDDELWRLKKIAKKGRIQKQFSLHGIHTVKDLLRRYITNEQSLYKMLDLPKKSWLAITDHAKTCVIDDYKLYGYHSQEPEIGLLFNSIYILVGVTFDWQNYYSPDILTPHDKHWVEIVKQQAYKNVNNLKMIDETKLNSLDLDGCLKKARQSDTPDQCLQHMDISTAQGQAETFPGYSQPSMSTSYTDEGMHNGQIYADPQPGTREMPHNSYVFDEFSSEMYNEEDSCHFDGSCLPFPEGGYSIQNERSDVEFIYGCPPWATWEPKSGIFFGSCDGEECSRYSTFTNSTVDISSSGKSKAAWCKIGFALKWVISVKRHATAKKNAQLFYHN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0896 581 Pfam Calmodulin binding protein C-terminal domain 320 380 IPR046829 -
Vra3g0896 581 Pfam Calmodulin binding protein central domain 251 314 IPR046830 -
Vra3g0896 581 Pfam Calmodulin binding protein-like N-terminal domain 91 238 IPR046831 -
Vra3g0896 581 MobiDBLite consensus disorder prediction 1 32 - -
Vra3g0896 581 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0896 581 PANTHER OS02G0177800 PROTEIN 1 579 IPR012416 GO:0005516
Vra3g0896 581 PANTHER CALMODULIN-BINDING PROTEIN 1 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0896 Vra-Chr3 9020142 9023538 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0896 50 392 Calmodulin-binding Proteins AT5G57580 38.244 1.01e-73 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0896 - - pvu:PHAVU_001G226000g 956.822