Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0895 ATGGAGATGGAGAAAAGGCGTTCCAAGGGAAGCTTCCTTAGCTTGTTTGATTGGAACTCCAAATCTCGAAAGAAGCTGGTTTGGAGCGATCCAGAGATTTCAAAGCAAGGGAAGGAAAATGTGGAGAACTTACACAAGTCGCAGCTCACTAGGATAAAGGTGGATGAATATGGAGCAAGTCCAAGTAACATTCAAAGTGGTGATTTTGACAGCACCCTCTCAATTTGTAGTGATGAAGGATGTGGGAGTAAAGCTCCTGGGTTAGTAGCGAGACTGATGGGTTTGGATTCGTTGCCAGCTTCGGCTGTCACTGAGCCCTCCTGCACCTCACTTTACGGCTCTACATCTCATGGAGTCTCTGACTGTAATGAGGGTGCTCTTCATTCAGTGGATGAGTTTTTCCCTGCAGACTACATAAATACACTGCTTAAGCTGGAGAAGTCTCAATTGGGTGCCATAGAGTCAAGGGCTAGAAAATTGGAAAACCTTCCAATAAAAAGATTTCAAACTGAAATGTTACCTCCAAAGTCAGCTAAATCCATTCCAGTTACTCATAATAAACTGCTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAAAATGCTGCTCATGTAATGGAGGCAGCGGCTAAGATAATTGAGGCGAGCCCTCAGCCGTATTTGAGGAATAGAATATCTACTGGGTTTTCTTCTGTTCCCTTGAGAATTCTCAATTTGAAAGAGAGATTGGAAGCTGCACAATATACACCAGTGACTGGAAAACCTACGAATATGAGCAAAACCTATCCTGCAAATGGCAAGCTTAGTGAGAGGAGTAGTAATTTGTCTAAATGCACTTCAGCATTCAAGGGTTCAAGAGGTTCAGAAAAAAATAGTCCTTGCCATTTAGCCAGTAAAGGGAAACCAGTTTCACTTGCAATCCACGCCAAAAACAACGCACATAGTAGAGATACATTGATTTCAAATGGTGACATGAAATGCACGAGACAGAAAGAGAAGAATGAGATGAAGTCAAATCAGCACTTAAGGAGCCAGAAACCAAGTACGCAAAAAGCCATGCAGCAGAGACCTTGCTCAAGTCGGAATGGCAATGTGCTTGGGCAGAATAATCAAAAGCAAAATAGCATGACTGCCAAGGGTAAATCAACTTCAAAAATAGATTCCAATAAGCCAACAACACGAGCTTCACCTTCAGAAACTTTTGGAATGAGGAAGACAACAAACAAGGGTGCTACAAATGCCAATGTTCATCCTAGAAGGTCAAGCATCAGGGCAACTGACATCCAAAAGGAGTTTCCACGATCCAAATCAGTAAGTACTTCCAGAAAGACAAAATATATCAGCAGTGATGTTCATGAGGCTGGAGGTCCTGATAATGCAGTCAATAATTTTGGAAGTAAGTCCATCAAATGCAATTTCACGAGTGATGGAAGTTTTGATCAAGATGCATTTAACATGAAAGAAAGCAAGGATGTTATTTCATTTACATTCACATCTCCCTTGAGGAGAAGTATGCCTGAGTCATCTTCCTCCACCGAGCAAGTCAACGGAACCAGAAATAGAATTGATGTAAACTCTCTTGAGCATAGTGATAATTTTCATCCCAAAAAACTGTCATTGTCTCCACAAGGAAAACATATGATAGACAGTGATGCTCTAAGTATCCTGTTGGACAAAAAGTTACAAGAATTGACATCCAGAATTAACTTACCTCAATTTACCTTGGCCGCAGAGGGGATTTCTTCTGGTTTGGGATCTAGTGTGCAAGACAACTTTCCCAGTGCACCAAGCACCATACCTAAGGAACAAGACCGAAGCCTATTTCCTGACCTGTTTAGTTATAAACTGGACAGCATTCTTGACTCTCGTCCAAGTGATGATTCCGTGCTTAGCATGAATCGGCAACTTCAGACTTCTGAAGTAAATCAAGATCCTAGCTGTAGCAGCAATAGTGAAAGTGGAAATGATATAGTTTGTTGTCGTTCAACTTCTGTTGCGGGGTCTGAAACTCTTGTCAGTGAAAGTTACTTGGATAGTGAAGACAGCGCTTACGCCAGCACAGTCTATTCTTCAATGCAAGACGAAGAAGCATCTAGTTTTTCCCAGATAAGCGAATCTGTATCACTTGAAAGTGAGGTGAAGGGACCAGAGCAAAGCCCTTCCATATCGGGGGATGGAAATATGACCGTCAAACAAATAAGTGGGATATTTAGTTCAGTTGATTTTAAAAGATCAAGTAACACAGAACTTGAATATGTACAGGATATTCTTGGTAATGCAGAGTTTATGGCAGAAGAATTTGCCATGGGTCAAACTAGTGCAGTCATTATGCCAAATTTATTTGAACTGTTGGAGAATCAGAATAGTAGAACAGAAAACTACGGAGAAGAGTACTCTAAACTTGAAAGGAAGGCTATATTTGATTGTGTGAGCGAGTTCCTGGAGTTAAGATGTAAGCAAGCTTTCATTGGAACGTGCAAAGTGTGGCCTGGGTGGATGATGGCAGTTCAGAGGAAGAACTGGATGGCAGAGGAACTGTATAAGGAGATGCTGAGTTTTAGAAGCATGGAAGAGGTAATGGTGGATGAGCTTGTCACAAAGGACATGAGCTCGGGATGTGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAAGTTGAGGGGGACATACTAGCTTATTTGATTAATGAATTAGTTTCAGATTTGTTACCAGTCTAA 2733 0.4149 MEMEKRRSKGSFLSLFDWNSKSRKKLVWSDPEISKQGKENVENLHKSQLTRIKVDEYGASPSNIQSGDFDSTLSICSDEGCGSKAPGLVARLMGLDSLPASAVTEPSCTSLYGSTSHGVSDCNEGALHSVDEFFPADYINTLLKLEKSQLGAIESRARKLENLPIKRFQTEMLPPKSAKSIPVTHNKLLSPIKSPGFLPPKNAAHVMEAAAKIIEASPQPYLRNRISTGFSSVPLRILNLKERLEAAQYTPVTGKPTNMSKTYPANGKLSERSSNLSKCTSAFKGSRGSEKNSPCHLASKGKPVSLAIHAKNNAHSRDTLISNGDMKCTRQKEKNEMKSNQHLRSQKPSTQKAMQQRPCSSRNGNVLGQNNQKQNSMTAKGKSTSKIDSNKPTTRASPSETFGMRKTTNKGATNANVHPRRSSIRATDIQKEFPRSKSVSTSRKTKYISSDVHEAGGPDNAVNNFGSKSIKCNFTSDGSFDQDAFNMKESKDVISFTFTSPLRRSMPESSSSTEQVNGTRNRIDVNSLEHSDNFHPKKLSLSPQGKHMIDSDALSILLDKKLQELTSRINLPQFTLAAEGISSGLGSSVQDNFPSAPSTIPKEQDRSLFPDLFSYKLDSILDSRPSDDSVLSMNRQLQTSEVNQDPSCSSNSESGNDIVCCRSTSVAGSETLVSESYLDSEDSAYASTVYSSMQDEEASSFSQISESVSLESEVKGPEQSPSISGDGNMTVKQISGIFSSVDFKRSSNTELEYVQDILGNAEFMAEEFAMGQTSAVIMPNLFELLENQNSRTENYGEEYSKLERKAIFDCVSEFLELRCKQAFIGTCKVWPGWMMAVQRKNWMAEELYKEMLSFRSMEEVMVDELVTKDMSSGCGKWLDFDVEAFEEGLEVEGDILAYLINELVSDLLPV* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0895 910 Coils Coil 785 805 - -
Vra3g0895 910 MobiDBLite consensus disorder prediction 252 272 - -
Vra3g0895 910 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 909 - -
Vra3g0895 910 PANTHER DUF4378 DOMAIN PROTEIN 1 909 - -
Vra3g0895 910 Coils Coil 143 163 - -
Vra3g0895 910 Pfam DUF761-associated sequence motif 77 102 IPR032795 -
Vra3g0895 910 MobiDBLite consensus disorder prediction 280 299 - -
Vra3g0895 910 Pfam Domain of unknown function (DUF4378) 750 902 IPR025486 -
Vra3g0895 910 MobiDBLite consensus disorder prediction 503 526 - -
Vra3g0895 910 MobiDBLite consensus disorder prediction 701 727 - -
Vra3g0895 910 MobiDBLite consensus disorder prediction 342 423 - -
Vra3g0895 910 MobiDBLite consensus disorder prediction 503 524 - -
Vra3g0895 910 MobiDBLite consensus disorder prediction 332 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0895 Vra-Chr3 9003338 9007873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0895 3 908 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 31.483 2.33e-90 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0895 - - gmx:100804688 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0895 3 9003338 9007873 Vra8g1455 8 31475627 31479711 PCT