Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0887 ATGGTTTGCGAGGAAGAATTGCTGATTGAAAAAGTCTGCGGGCTGTATGAACAAATCTCGAGCCTCGAGAGTCTGAAACCTTGCAAAAATGTCGACATGCTTTTCACCCAACTAGTCCTCACATGCATACCCCCCAGCCCAATAGATGTCACAAACCTAAACAAAAACGTGCAAGAGATTAGATCTCACCTTATAAAACTCTGTGGTGAAGCCGAAGGCCATTTAGAGACCCACTACTCAACTCTCCTAGGTTCATACGACAACCCTCTTCAAAACCTTCATATTTTTCCTTATTATTCAAACTACCTCAAACTTGGTCTCCTTGAGTTCACTATCCTCACCCAGCACTGCACCCATGTCCCCAGCAAAATCGCCTTCGTGGGTTCTGGACCCCTCCCTCTCACCTCGATTGTGTTGGCATCCAACCACTTACCCTCCACCACATTTCACAACTATGACATGGATCCTTTAGCCAATTCCAACGCTATGCGCTTGGTTTCCTCTCACCCTGACTTGTCCAACCGCATGGTTTTTCACACCACTGACATATTGGATGTGTCCAACGCTTTGAAGGAGTACGAGGTTGTTTACTTGGCAGCACTTGTGGGCATGGACAAGGAGGGCAAAAACCGCATCATCGATCACTTGGCCAAGCACATGAACCCTGGAGCACTTCTCATGCTAAGGAGCGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTCATTGAGCCTTGCGATCTTCGAGGCTTTGAGGTCCTCACCGTGTTCCACCCCACCGATGAGGTCATCAACTCCGTTCTCATAGCACGTAAATATCCTGTCCCTATGCACTCACTGGATCAAGGCCTTGCTTCCAAGATCCTTCCCAACAAATGTTCCGAGATTCAAGCCTTCAACCCCCTCAACCATGGGAACATGATCGAGGAATTTGCTATTGAGGAACAGCTCTAG 951 0.4816 MVCEEELLIEKVCGLYEQISSLESLKPCKNVDMLFTQLVLTCIPPSPIDVTNLNKNVQEIRSHLIKLCGEAEGHLETHYSTLLGSYDNPLQNLHIFPYYSNYLKLGLLEFTILTQHCTHVPSKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPLANSNAMRLVSSHPDLSNRMVFHTTDILDVSNALKEYEVVYLAALVGMDKEGKNRIIDHLAKHMNPGALLMLRSAHGARAFLYPVIEPCDLRGFEVLTVFHPTDEVINSVLIARKYPVPMHSLDQGLASKILPNKCSEIQAFNPLNHGNMIEEFAIEEQL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0887 316 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Vra3g0887 316 PANTHER SYNTHASE, PUTATIVE-RELATED 1 316 - -
Vra3g0887 316 PANTHER NICOTIANAMINE SYNTHASE 3 1 316 IPR004298 GO:0030410|GO:0030418
Vra3g0887 316 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 73 232 IPR029063 -
Vra3g0887 316 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Vra3g0887 316 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0887 Vra-Chr3 8952877 8954094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0887 1 313 Nicotianamine Synthase Gene Family AT5G04950 60.000 2.12e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0887 K05953 - gmx:100794250 570.466