Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0886 ATGGAAGCAGTTTACAGGTTGAAACCCCTTTTGCCTTGTGTTGAGGATGTGCTTAGAGTTGGGAACGCTGCCGTTACTACTACTTCTGATATGCGTCTAGGAACGACACCTAATTGTTATCTGCAGCTAGAAGCACCTGAACCCAACGTAACCGAGTCAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCGACCACCCTCTTTATCCAGATTTACTCTCTGCATACATTGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGTTCGCCGCGAGAAAGGGGACGGTCCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAGGCGACTTTGTTTTTGGGAAACATGGAATCACAACTGAGCAACCTTTGTAATGGAACACTGTCAAAGTCAGCCGATAACAACCACTCCGTAGGTGGTGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTCGTATATCTTCTTCTTTAAGTTGCCAAGGTGATCAAAATCTGAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGCTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATTCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAAAGGCATTGGAAACCAACTGACGATATGCGATTCGCCGTCATGGATGGGTTAAGTGGCGTTGATGGAGGAGCTATGTTCTTTTAG 921 0.4615 MEAVYRLKPLLPCVEDVLRVGNAAVTTTSDMRLGTTPNCYLQLEAPEPNVTESDMTDRMVKIQIADHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNVRREKGDGPELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLSKSADNNHSVGGGASEEELSCGEMEEVEGRISSSLSCQGDQNLKEMLLRKYSGHFSALRKEFLKRRKKGKLPKDSKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTDDMRFAVMDGLSGVDGGAMFF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0886 306 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Vra3g0886 306 SUPERFAMILY Homeodomain-like 223 293 IPR009057 -
Vra3g0886 306 SMART ELK_2 201 222 IPR005539 GO:0003677
Vra3g0886 306 SMART HOX_1 223 288 IPR001356 GO:0003677
Vra3g0886 306 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 295 - -
Vra3g0886 306 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Vra3g0886 306 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 295 - -
Vra3g0886 306 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Vra3g0886 306 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vra3g0886 306 Pfam ELK domain 202 222 IPR005539 GO:0003677
Vra3g0886 306 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Vra3g0886 306 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Vra3g0886 306 Gene3D - 219 291 - -
Vra3g0886 306 CDD homeodomain 224 284 IPR001356 GO:0003677
Vra3g0886 306 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Vra3g0886 306 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0886 Vra-Chr3 8943421 8947510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0886 45 298 Homeobox Transcription Factor Family AT1G23380 53.640 1.96e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra3g0886 KNOX2 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0886 - - gmx:100814830 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0886 3 8943421 8947510 Vra8g1380 8 30651525 30655767 PCT