Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0871 ATGGCTAGCGGTCTCGTTCCCCTCATCTTAATGATTGTTGTGCAGCTAGTCTATGCCGGGATGAATATCACTTCGAAGCTCGCAATAGAATCTGGCATGAGTCCTCTAGTCCTTGTTGCCTATCGACAACTCTTTGCCACCGTGTCCATTGCTCCCTTTGCATATTGGCTCGAATGGAAGACACTTCCCAGGTTGAATAAGCAGCTTATGTTTCGGATATTACTATCGTCCTTGACAGGAGTTACAGGAAATCAGATTCTGTACTTTGTGGGGCTAAAATTTTCAACCGCTACAATTGCATGTGCACTGTCGAATTTGCTGCCAGCTTTCACTTTTATCCTGGCAGTTATCTTCAGACAAGAGAATCTAGGAATCAAGCAGAGGTCTGGCCTAGCAAAGGTATTCGGGACAGTATTGTGTGTGAGTGGAGCGTTGCTTTTGTCATTCTACCATGGAAAAACCATCGGTTTAGGGCAATCTAGTATTCACTGGAGATATGCAGAGAAAATGGAAGGAACTACCACTTCTGGCTCAGGAAACATGTTTGTAGGCCCTTTACTCTTAATTGCTAGCACTCTTGTTTGGGCGCTGTGGTTCGTAATTCAAACAGACATAAGCAAGAAGTTCCCAGCTCCTTACACAAGCACAGGCTTAATGTGTTTCTTGGCAAGCTTTCAATGCATCATTATTGCATTATGTTTCGACCACAGTGTCTCAGCTTGGTCACTCCGCGATGCCATGAGACTTTCTGCTGCTATTTATGCGGGAGTATTGGCGACCGGGTTGGCGTATTCCCTCATGTCGTGGGCCATTGAGAGAAAAGGTCCACTTTATGTCTCAGTATTTACGCCTTTGCAGCTTGTCCTCACAGCAATTTTAAGCTGGGCTTTGCTACGGGAGAAATTATATGTTGGAACTGCCATAGGGTCTCTGTTGATAGTTTTGGGGCTCTATAGTGTTCTTTGGGGGAAGAGTGAAGAGGTGAGCACGGAAGACGGTATGAAAGAAGCAGTGAAGGATCCGAAGAATGACACCGAAATGCAATACTATGTGCCATCCAATGGTAATCGTGTCAGTACTTGA 1083 0.4515 MASGLVPLILMIVVQLVYAGMNITSKLAIESGMSPLVLVAYRQLFATVSIAPFAYWLEWKTLPRLNKQLMFRILLSSLTGVTGNQILYFVGLKFSTATIACALSNLLPAFTFILAVIFRQENLGIKQRSGLAKVFGTVLCVSGALLLSFYHGKTIGLGQSSIHWRYAEKMEGTTTSGSGNMFVGPLLLIASTLVWALWFVIQTDISKKFPAPYTSTGLMCFLASFQCIIIALCFDHSVSAWSLRDAMRLSAAIYAGVLATGLAYSLMSWAIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAIGSLLIVLGLYSVLWGKSEEVSTEDGMKEAVKDPKNDTEMQYYVPSNGNRVST* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0871 360 Pfam EamA-like transporter family 184 321 IPR000620 GO:0016020|GO:0016021
Vra3g0871 360 Pfam EamA-like transporter family 7 148 IPR000620 GO:0016020|GO:0016021
Vra3g0871 360 PANTHER WAT1-RELATED PROTEIN 3 340 IPR030184 GO:0016021|GO:0022857
Vra3g0871 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 325 - -
Vra3g0871 360 PANTHER WAT1-RELATED PROTEIN 3 340 - -
Vra3g0871 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0871 Vra-Chr3 8834450 8837300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0871 3 356 Nodulin-like Gene Family AT1G09380 56.198 5.26e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0871 - - gmx:100801512 602.053