Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0860 ATGGGCGGAGATGGAGCGACGGCCAACGCGGAGGCGCAGTACGCCTCTGCAAAGACATCGGTGTGGTGGGACATCGAAAACTGCCACGTGCCCAAGGGTTCGGATCCGCACGCGATCGCGCAGAACATCAGCTCCGCGCTGGTCCGCATGAATTATCGTGGCCCTGTCTCCATCTCCGCCTACGGAGACACCACGCGCATCCCACCCTCAGTACAACACGCGCTCTCCAGCACTGGAATTTCCCTCCACCACGTCCCTGCCGGCGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGACATGCTATTCTGGGCAGTGGATAATCCTGCACCCGCCAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAAGCATCAGCACCCTTGGTTGCTGCTGCTAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTCTTTCTAATGGTGAATCGCAACAACTTGGTAATGGTAGCCTTAGCCATGTCTCATCTTCTGACTCCTTACAAGTTCCGGTTACAAGTACTGCTCAGATGCAGCAACAAGTAGAATCCTATTCAGAAGTTCATGCAGGAAATTCAAAATTTCCAAATGGAGGCAGGGGATTCGACACTAGGTTTCAGGGTAAACCTAATTGGAGAAGCCCGAGTCAATCAAATGCACCCAGAGCCGTGAATCCACCACCATCTGGACTTCAAGATAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCGCAGAGTGGATCTGCTACAAATTATTTTCATGGCAATACTGATCAGTTATGGAGCAGTAATAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGGCCAAATAACTTCCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATATACTCCAAATCCCCATACTTTTGCACCTCCAACGGTGCCACCTAGAACTGGTGGTCCCAATTTCAACTCAGGGCCACATACCACTGTTCCAGATATTGGTAATCTAAACATTTCGGGATATCCTAATAGTGTTCATAACCCACCAACTATTCAACAACGGAATGGAGATTTGAAACAAAATCCTAATAGTAGTGCTCCACATCTTTTAAGATCAATTGATGAAAAAAATGGACATGTGGCACATAACAGTGGCACACAACAATTACGCCAAGGTTATCAACATGTTCCAGAATATCAACCAATGCTACCGGCAGCAATGGGTAATAATAATCTTCCTGGTAGTGGTATGTGGGGTTCTCCAGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTGAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTTTGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGACAGTGCTATTGAGCAGAATATGGTTGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTATGGAAGTGCGTCAATCCTTTAGGTGGTAATCCTAAGCAACGCTCAAAAGAAACATGGGATCAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACTCTGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTCAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATAATCCGTCTGGTTGGCAACCACTTAGCATTGCTCTACCTGAGACAAACCCTGATTCAGGGGTTGTGGCTAGAGTATAA 1893 0.4469 MGGDGATANAEAQYASAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYRGPVSISAYGDTTRIPPSVQHALSSTGISLHHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQVPVTSTAQMQQQVESYSEVHAGNSKFPNGGRGFDTRFQGKPNWRSPSQSNAPRAVNPPPSGLQDNRNNINSYRPGNFNPNVPQSGSATNYFHGNTDQLWSSNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYTPNPHTFAPPTVPPRTGGPNFNSGPHTTVPDIGNLNISGYPNSVHNPPTIQQRNGDLKQNPNSSAPHLLRSIDEKNGHVAHNSGTQQLRQGYQHVPEYQPMLPAAMGNNNLPGSGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALDSAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQRSKETWDQIEKFLTTPAGRSAIMATLCKYEAGIVIKNMCFKDLALGDVLQILNMLITHKKWIAHNPSGWQPLSIALPETNPDSGVVARV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0860 630 CDD PIN_limkain_b1_N_like 18 142 - -
Vra3g0860 630 Gene3D - 9 161 - -
Vra3g0860 630 MobiDBLite consensus disorder prediction 170 197 - -
Vra3g0860 630 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 615 - -
Vra3g0860 630 MobiDBLite consensus disorder prediction 209 300 - -
Vra3g0860 630 MobiDBLite consensus disorder prediction 232 300 - -
Vra3g0860 630 PANTHER LIMKAIN B LKAP 2 615 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vra3g0860 630 MobiDBLite consensus disorder prediction 327 394 - -
Vra3g0860 630 Pfam OST-HTH Associated domain 568 617 IPR025677 -
Vra3g0860 630 MobiDBLite consensus disorder prediction 343 394 - -
Vra3g0860 630 Pfam NYN domain 18 154 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0860 Vra-Chr3 8719294 8723701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0860 8 267 C2H2 Transcription Factor Family AT5G61190 57.308 5.44e-84 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0860 - - gmx:100794608 1156.35