Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0857 ATGGACTATCGGTGGACTAATGGTAGGCCGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTGTTGAGGATTTGTCAGAAGATTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCGTCTCTGGACACACAGTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGGAAGGGTCTTGGGAAGGATGAACAAGGAATCACTGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTTGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAAGAACATGTGAAGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTGGCAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAGAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGCCTTCAATTGCAACAAGAATCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCTACTGCACTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCGTCTAAAGGCAGTGGTTCCAAGATAACTTTTGGTGCCAAGAAACAAAATGTTGCAAAGAAGCAAAGTGCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 915 0.4186 MDYRWTNGRPDTGGRDRRQSKREQAYQDSLVEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGGSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQSAPISSIFSNDSDEE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0857 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Vra3g0857 304 MobiDBLite consensus disorder prediction 1 30 - -
Vra3g0857 304 MobiDBLite consensus disorder prediction 83 103 - -
Vra3g0857 304 MobiDBLite consensus disorder prediction 195 222 - -
Vra3g0857 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Vra3g0857 304 MobiDBLite consensus disorder prediction 227 298 - -
Vra3g0857 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Vra3g0857 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Vra3g0857 304 MobiDBLite consensus disorder prediction 195 304 - -
Vra3g0857 304 MobiDBLite consensus disorder prediction 9 30 - -
Vra3g0857 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
Vra3g0857 304 SUPERFAMILY beta-beta-alpha zinc fingers 144 196 IPR036236 -
Vra3g0857 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0857 Vra-Chr3 8700734 8704241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0857 1 304 C2H2 Transcription Factor Family AT5G26610 62.866 6.22e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0857 - - gmx:100793206 541.962