Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0856 ATGGCCGATGGCAGCACAGCTACCTGCGTCGATATCCTCATCGCCATCATCCTCCCTCCTCTTGGAGTTTTTCTCAAGTATGCCTGCAAGTTAGAGTTCTGGATCTGTTTGCTGCTCACCATTCTCGGCTACATTCCTGGAATTATCTATGCTGTCTATGCCATCACCAAGTGA 174 0.4885 MADGSTATCVDILIAIILPPLGVFLKYACKLEFWICLLLTILGYIPGIIYAVYAITK* 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0856 57 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016021
Vra3g0856 57 PANTHER BNAC03G34420D PROTEIN 3 57 - -
Vra3g0856 57 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 3 57 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0856 Vra-Chr3 8684208 8685203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0856 5 57 RCI2 Gene Family AT3G05880 75.472 5.49e-25 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0856 - - vra:106757363 118.627