Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0854 ATGAATAACAACACTTGTGCAGCTGATCAATCTTATGCATCCAAAAACGATTTGTTTGAGCTGGTTTGGGAAAAGGGCCAGATTTCAATGCAGGGTCAATCATTTAGAGCTCGAAAGAGCCCAAATTGTAAAACTTTGCCATCTCATTGCTTACCATCTCACACTCCTCTAGGAGGATATGCTAAGGATAATAATACTACCATCACAAGGATGGGGAAGTGTGGCAGTTTAGGAGCTGAATTGAATGAAATCACAAGGGTGGTCCCTTCGGGTGAAGTGTATTTTAGTGAGGAAGAAGAAGCTGAAGACATGGTGATGCCATGGTTGAATTATGGAATGGATGACTCTTTGCAACATGGATATAGTTCTGATTTTTTCAATGAACTATCTGGGGTCACCATGAATGAGCCGTCAGCATCAAATGGTTTTTCTTTGTTAGACAGAAGAAATAGTTGTAGTAAGGTATTTAGGGACACTCATAAAAACACTCCATTTGCATCTGTTAGATCCAAGATAGTAGATATAGCTGAAAATAATACAAATAATGTTCCATCTCCCTCAAGTGGTTTTTCTGGCTTAAAGATGGAGAAGCAAGGCTCGGTTGCGTGTGGCAATAGTTCCACCATGATGAATTTTTCCCACTTTGCAAAGCCTGTTGCTATTGTCAAAGCTAACCTTGAGAACATTGGTTTGGCATCAAGATCAGCAAGTGTGGGAATAAAGATAAAAGGTGCTGCTGCAACTGTTGCGACAAATCCTGCTGAATCATCAAAAGTTGAATTATTCGGAGAGTGTCCAAAAAAAGCAGTCACACAAAGTCATCAGGTTACGGAGCCAAAACCTCTTGAGCAGGATGGTGCCGTTTCTACAAAGTGTGATCCTTCTTGCAAAGATGTCTGCAGGATTGATGACACTTCAAACCTAGTCGTTGGAGAAAGTGTTAACAAAGGAAAGGAAGCTGTTGAAAAAAACGAACAGCCAGCTGTAGTCTCCTCTTCTGTTTGCTCCGGCAATGGTGCAGAGAGGTGTTCTAAGGATCCAAATCAAAATTTGAAGAGAAAAAGTGTAGACACCGACGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTAGAAAAGGAGGTTCCTGCACCACAAATTGGAGCCAAGAGACACCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAGTACCAAATTGCAATAAGGCGGATAAAGCTTCGATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAGTAATGTCAATGGGAACTGGTTTATACATGCCTGCTATGATGTTACCTCCGGGAATACAACACATGCACGCACGACATATGGGTCCTTTTCCTCCAATAGGTGTTGGCATGCAAATGAGGTTAAGAGTGGGTTGTGGCATGGGCATGATTGATGGTAATGATGAGACTTCTGGATTTCCAATGGCTCATGTGCCCCAAATGCAAGGAGCAAAACTTCCCATTGCACATGCATCTGGTTCCACTGCTTTACATGGAATGCCAAATGGTCAAGTGTTTGGGGTTCTTGGTCAGGGTCACCCCATGCCAATGCCACATGCTCCCATATTTTCATTTCCAGGGGAATCCTTTATGGAACCATCAACTTTAGGACTAAATGCCTGTGGAACAGCACTCACGGAAAATGTTGGTTCGGTTTCAGCCTGTAACTTAAAGGATCCAGTGCCACATGTGAACTCACAAGATGCAACAAAACACTAA 1809 0.4234 MNNNTCAADQSYASKNDLFELVWEKGQISMQGQSFRARKSPNCKTLPSHCLPSHTPLGGYAKDNNTTITRMGKCGSLGAELNEITRVVPSGEVYFSEEEEAEDMVMPWLNYGMDDSLQHGYSSDFFNELSGVTMNEPSASNGFSLLDRRNSCSKVFRDTHKNTPFASVRSKIVDIAENNTNNVPSPSSGFSGLKMEKQGSVACGNSSTMMNFSHFAKPVAIVKANLENIGLASRSASVGIKIKGAAATVATNPAESSKVELFGECPKKAVTQSHQVTEPKPLEQDGAVSTKCDPSCKDVCRIDDTSNLVVGESVNKGKEAVEKNEQPAVVSSSVCSGNGAERCSKDPNQNLKRKSVDTDDFESQSEDVEEESVGVEKEVPAPQIGAKRHRSAEVHNLSERRRRDRINEKMRALQELVPNCNKADKASMLDEAIEYLKTLQLQLQVMSMGTGLYMPAMMLPPGIQHMHARHMGPFPPIGVGMQMRLRVGCGMGMIDGNDETSGFPMAHVPQMQGAKLPIAHASGSTALHGMPNGQVFGVLGQGHPMPMPHAPIFSFPGESFMEPSTLGLNACGTALTENVGSVSACNLKDPVPHVNSQDATKH* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0854 602 PANTHER TRANSCRIPTION FACTOR PIF3 3 600 IPR044273 GO:0003700|GO:0006355
Vra3g0854 602 MobiDBLite consensus disorder prediction 326 345 - -
Vra3g0854 602 CDD bHLH_AtPIF_like 390 452 - -
Vra3g0854 602 PANTHER TRANSCRIPTION FACTOR PIF3 3 600 - -
Vra3g0854 602 Gene3D - 385 448 IPR036638 GO:0046983
Vra3g0854 602 MobiDBLite consensus disorder prediction 318 377 - -
Vra3g0854 602 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 451 IPR036638 GO:0046983
Vra3g0854 602 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
Vra3g0854 602 SMART finulus 396 445 IPR011598 GO:0046983
Vra3g0854 602 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Vra3g0854 602 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0854 Vra-Chr3 8673623 8676722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0854 16 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.607 1.95e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra3g0854 HLH 8.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0854 K12126 - gmx:102659557 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0854 3 8673623 8676722 Vra3g0854 3 8673623 8676722 ECH