Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0853 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCTGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCTAAACTCGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATTAATTACCTTAGGCCAGATTTGAAGAGAGGGGCGTTCTCACAGCAGGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATCGCTGCCCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCTCTCACGGCTGACAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTATTGAGCCACCAAAACAAAAGCCCATAACTTGTACTACTTCCATGCCAATGGATAGATATCCCCTTGAAGTTTCTGCTACCTCAAAGATCAGCGGTGGTGGCAACAACAGCAGCAGCACCCTAGACAGGTTTGGCACTTGTCATGACAACAACAGTTCCATGGCTAGTTCTGATATGATGGGAATGGGATACTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTGCTGCAAACCCCAACAACACCCCACTTTGTTTCATTCCTGGTTCCACATCTTCCCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGTCAGCCTCCAGTCTAATAACAACAACCCATCTTCCATATTTTCTGACGGGGTTCAGAACTGGGAAGGAAGTGCCTTCAGCAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATGGCAGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGACAGATAATAAAGATGCTAATTCTTCTCATGTGGTACCCTTGCAATCAGAAGCAGAAGACATCAAATGGTCCGAGTATCTGAACAACACCCCTTTTTACCTGGGAAGCACAGTGCAGCAGCATCAAACCACTCACTCTCTCTACAGTGACGAGGTGAAGCCAGAAACAGGCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCACTTTCAACCCTCGGATATATATAGCAAAGATCTCCAGAGATTTTCAGTAGCCTTTGGACAATCCCTGTAG 1320 0.4689 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTADRSNQKASNEVSVIEPPKQKPITCTTSMPMDRYPLEVSATSKISGGGNNSSSTLDRFGTCHDNNSSMASSDMMGMGYFPFQHLNYGPNMGLTAANPNNTPLCFIPGSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSIFSDGVQNWEGSAFSNNNNNNASKSNGSSSCSIQLQSSTNFLDHGSTITWGLQAESATKTDNKDANSSHVVPLQSEAEDIKWSEYLNNTPFYLGSTVQQHQTTHSLYSDEVKPETGFIADESSTSWHHSQHFQPSDIYSKDLQRFSVAFGQSL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0853 439 MobiDBLite consensus disorder prediction 129 143 - -
Vra3g0853 439 SMART sant 66 114 IPR001005 -
Vra3g0853 439 SMART sant 13 63 IPR001005 -
Vra3g0853 439 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra3g0853 439 CDD SANT 17 61 IPR001005 -
Vra3g0853 439 Gene3D - 11 67 - -
Vra3g0853 439 PANTHER HOMEODOMAIN-RELATED 1 432 - -
Vra3g0853 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra3g0853 439 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra3g0853 439 MobiDBLite consensus disorder prediction 119 170 - -
Vra3g0853 439 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra3g0853 439 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra3g0853 439 Gene3D - 68 147 - -
Vra3g0853 439 CDD SANT 69 109 IPR001005 -
Vra3g0853 439 PANTHER MYB DOMAIN PROTEIN 55 1 432 - -
Vra3g0853 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra3g0853 439 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0853 Vra-Chr3 8663124 8665482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0853 1 439 MYB Transcription Factor Family AT1G09540 48.678 2.61e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0853 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0853 K09422 - gmx:100788976 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0853 3 8663124 8665482 Vra3g0831 3 8445906 8447890 ECH
Vra3g0853 3 8663124 8665482 Vra3g0853 3 8663124 8665482 ECH
Vra3g0853 3 8663124 8665482 Vra8g1426 8 31195234 31197182 PCT