Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0852 ATGGCGAGAGTTTTCTGGACTGCCATTGCTATAGCACTAGTTTTCAGCAGCTGGGTTGATGGGTTCGAAGGTTATTATGAACATCAATTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCATGAAGCTTCCTTATCCTACGCCGGGAGTAATCTTCTGCTGGTAGGACTCACCCTTGTGCAAAATGCTGCTGCTAAAGGAGCAGTTTGCTTGGATGGAACATTACCCGGTTATCATTTGCACCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATCAGAACATGTGTTTATCGCAAGAAAACTCGGCGTGGATCATCAGATTTCATGGAAAAAGAGATATATTTTACTGGAATATTGAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCATTTGCTGGGGACAGTGAAGATGAGACTGCTGAACTGCAATTCAGAGGACAACGTATTTGGACAGCTGCCATGGAGGATTTGATGTCAAAGGGAATGCGTTTTGCCGATCAGGCTCTTCTTTCGGGATGCTCCGCGGGTGGGTTAGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAATGACCACCAGAGTCAAATGTCTAAGCGATGCTGGGTTGTTTCTTGATGCGATTGACGTATCTGGCGGCCGTACACTCAGGAACTTATACAGTGGTGTTGTAGGATTGCAGGGAGCGCAGAAGAATCTGCCTCAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCTGCAGATCCGCATGGCTATTGGCGTGATTGTAGATTAAATCATGCTAAATGTACTGCACCGCAAATCCAATATCTGCAAGGATTCAGGAATCACATGCTGAATGTTATTAAAGACTTCGCAAGAGCAAACCAGAATGGCTTGTTTATTAACTCATGTTTTTCTCACTGCCAAACTGAGAGACAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCTATTGCTCTGGCTGTTGGAGATTGGTATTTCGATCGAGCAGGTGTTAAGGTTATTGATTGTCCATACCCTTGTGATAATACGTGCCATCATCTGATTTTCAGATGA 1257 0.428 MARVFWTAIAIALVFSSWVDGFEGYYEHQFNETELSLLEAHEASLSYAGSNLLLVGLTLVQNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIYFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDSEDETAELQFRGQRIWTAAMEDLMSKGMRFADQALLSGCSAGGLATIIHCDEFRGLFPMTTRVKCLSDAGLFLDAIDVSGGRTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWRDCRLNHAKCTAPQIQYLQGFRNHMLNVIKDFARANQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKVIDCPYPCDNTCHHLIFR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0852 418 Pfam Pectinacetylesterase 53 397 IPR004963 GO:0016787
Vra3g0852 418 PANTHER PECTIN ACETYLESTERASE 4 417 - -
Vra3g0852 418 PANTHER NOTUM-RELATED 4 417 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0852 Vra-Chr3 8652311 8656791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0852 1 418 Carbohydrate Esterase AT1G57590 67.139 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0852 K19882 - gmx:100782401 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0852 3 8652311 8656791 Vra3g0833 3 8469337 8474875 ECH
Vra3g0852 3 8652311 8656791 Vra3g0852 3 8652311 8656791 ECH
Vra3g0852 3 8652311 8656791 Vra8g1428 8 31210447 31215543 PCT