Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0848 ATGGCGTGGCGCGAGCTTGGAAAGAAGAAAATATATATGAATTTTACTAGAGCTTTGACTGCATCGGCATTTAGGCACGTGACAGGATCAAGTTTTGCATCCCCCTTTGCTGCACAATCTGTTTATGCATCAGTAAAATGCGTGACAGATTTCATCAACCAATCTCAGGGAGTGGCTGGTTTTGGCAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCTCCTGTCTGGGCAAGAAGTGATGAACCATTAGGTGTGAAGACCCCAAAGGGGGTGCAATATGTGAAAAGGGCTGGTAGAAACTATCTTCCTGTTAAAGCTCCTTATGCCCGTCCTAATGTCTCAGCTAACAAATCAAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGTCGAAGGTACAGAAGTTTTACCTCGTCCTGCAGTTGTAACTGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTAGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCGATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGCGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAGGCTGCCAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCCTTACTACTTCAGGCAGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTAGAAGCAAGACTTGACAAGGGACGGGGTCCATTGGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTCGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATACGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTAGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCAATCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATATGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACCACTTCAGATGATTCCATGGACGTTCCAGTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACTGATGCTTTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAAGTCAGGCAGCAACTCGTGCCAGTATCAAGATAATCCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCCCCTGGAACTTCTGAAACCCAGGTGGCTGGACAGGCAGAAGTGCTTAACATCTTTGAAATCAAAGGGAGCAAATCGAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTTTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGAGAAGTGGTGTTTGAAGGAAATTGTACGTCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAAAAGGGAAGTGAGTGTGGACTAGTAATTAGCAATTGGTATGATTTCAAAGTTGGAGATGTTATTCAGTGCTTAGAACAAGTTGTAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAATGTTGA 2157 0.4441 MAWRELGKKKIYMNFTRALTASAFRHVTGSSFASPFAAQSVYASVKCVTDFINQSQGVAGFGSETKECGIRCFHASSPVWARSDEPLGVKTPKGVQYVKRAGRNYLPVKAPYARPNVSANKSNPDKTIEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSVEGTEVLPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDTAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVQSEERARMLSSGRQKKYEENRLRNKMIQDKPTTSDDSMDVPVRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGNCTSLKREKQDVDTVKKGSECGLVISNWYDFKVGDVIQCLEQVVRKPKFIKSESGAVRIEC* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0848 718 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 103 709 IPR015760 -
Vra3g0848 718 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 103 709 - -
Vra3g0848 718 Gene3D Translation factors 601 703 - -
Vra3g0848 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 388 IPR027417 -
Vra3g0848 718 Gene3D - 195 369 IPR027417 -
Vra3g0848 718 SUPERFAMILY Translation proteins 371 453 IPR009000 -
Vra3g0848 718 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 606 IPR036925 -
Vra3g0848 718 CDD IF2_mtIF2_II 373 468 IPR044145 -
Vra3g0848 718 Hamap Translation initiation factor IF-2 [infB]. 4 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vra3g0848 718 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 197 367 IPR000795 GO:0003924|GO:0005525
Vra3g0848 718 CDD mtIF2_IVc 607 696 - -
Vra3g0848 718 Pfam Elongation factor Tu GTP binding domain 202 358 IPR000795 GO:0003924|GO:0005525
Vra3g0848 718 SUPERFAMILY Translation proteins 602 703 IPR009000 -
Vra3g0848 718 TIGRFAM small_GTP: small GTP-binding protein domain 200 352 IPR005225 GO:0005525
Vra3g0848 718 TIGRFAM IF-2: translation initiation factor IF-2 125 701 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vra3g0848 718 CDD IF2_eIF5B 201 364 - -
Vra3g0848 718 Gene3D - 495 599 IPR036925 -
Vra3g0848 718 Gene3D Translation factors 370 486 - -
Vra3g0848 718 Pfam Translation-initiation factor 2 497 589 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0848 Vra-Chr3 8609792 8616000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0848 188 587 Eukaryotic Initiation Factors Gene Family AT1G76810 26.737 9.02e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0848 K02519 - gmx:100781314 1246.49