Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0844 ATGGCTTCTCTCATAGGCGTTTCTTCCATTTATCAAACGCCTGCTCTCGAACTCTACCAGAGGCCAAACGCTACTTCCACTTCCTCCGTTAGGTTGCAATGTTTGGACTCCAAGTCTCACTTCAACAACCTCCTCCGAGCCCACCGCCACTCCCCTGGACCCACCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACCAATTCGAACACTCCTCAGATTCTCTCCCCGCCGAACCCTCCAACTCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGCGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTGTTAGTTCCTGCACTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCTTTCGGAATTCCAGTTATTAAAGGCCTCACTGAAGATGAAGATGAGCCTTCTCTCAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATTATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAGAAGCTCGCTGAAGGGATAAAACTTTATGCTATATCAGCTACTGCCACTTCAAAGCGGACAATTCTCTCTGACCTCGTAACTGTTTATGCAAAGGGTGGGAAGACTATTGTATTTACACAGACAAAAAAAGATGCCGATGAAGTATCATTGGCATTAACAAATAGTATAACGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACACCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTCAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCGCCAGCTATGGAAGAGGTCTTGGAGTCATCTGCCGAGCAGGTTGTTGCCACACTTGGTGGAGTTCATCCCGAATCTATTCAGTTTTTCACCCCAACTGCACAAAGACTGATCGAAGAACAAGGAACAACTGCCCTTGCAGCTGCCCTTGCACAACTTAGTGGATTTTCCCGACCTCCATCATCCCGGTCTCTTATCACCCACGAACAGGGATGGACTACGTTGCAACTAATTCGGGATTCGGAAAATAGTAGATATTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCTGATGAAGTTGGGAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAATTGCTTACTAAGGACATACCACCTGGGAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCGCTGACAGAGAACGAGGTAACCGAAGGGGATCTACTTCTAGGGGAGGTTTTACTTCTAGGGGAGGAGGTTTTGCTTCTAGGGACCGGAGAGGCTTTAAGTCCTCAAGGGGATGGGATGGGGAAGACTCTGATGATGACGACTTCAGTGATCGATCTAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGTGGCAATAGCTGGTCTCGAGCAGGAGGTAAAAGCGGTGGGGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTCAATTGTGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAAATCTTCAAACCGGCGAAGCTTTTTTTAA 2331 0.4762 MASLIGVSSIYQTPALELYQRPNATSTSSVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQTDHQFEHSSDSLPAEPSNSDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDEDEPSLRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEEVLESSAEQVVATLGGVHPESIQFFTPTAQRLIEEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLIRDSENSRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTISKITKLPPLQDDGPPSDFYGRFADRERGNRRGSTSRGGFTSRGGGFASRDRRGFKSSRGWDGEDSDDDDFSDRSSRRGGRNFKTGGNSWSRAGGKSGGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPKSSNRRSFF* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0844 776 SMART helicmild6 376 456 IPR001650 -
Vra3g0844 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 765 - -
Vra3g0844 776 CDD GUCT_Hera 550 629 - -
Vra3g0844 776 Gene3D - 725 774 - -
Vra3g0844 776 Pfam Helicase conserved C-terminal domain 349 456 IPR001650 -
Vra3g0844 776 SUPERFAMILY Retrovirus zinc finger-like domains 738 772 IPR036875 GO:0003676|GO:0008270
Vra3g0844 776 CDD SF2_C_DEAD 336 465 - -
Vra3g0844 776 Pfam Zinc knuckle 752 768 IPR001878 GO:0003676|GO:0008270
Vra3g0844 776 MobiDBLite consensus disorder prediction 626 751 - -
Vra3g0844 776 Pfam GUCT (NUC152) domain 543 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vra3g0844 776 PANTHER - 65 765 - -
Vra3g0844 776 MobiDBLite consensus disorder prediction 680 694 - -
Vra3g0844 776 MobiDBLite consensus disorder prediction 97 116 - -
Vra3g0844 776 ProSiteProfiles Zinc finger CCHC-type profile. 753 768 IPR001878 GO:0003676|GO:0008270
Vra3g0844 776 CDD DEADc 126 323 - -
Vra3g0844 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vra3g0844 776 MobiDBLite consensus disorder prediction 757 776 - -
Vra3g0844 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 496 IPR001650 -
Vra3g0844 776 Pfam DEAD/DEAH box helicase 139 311 IPR011545 GO:0003676|GO:0005524
Vra3g0844 776 MobiDBLite consensus disorder prediction 650 664 - -
Vra3g0844 776 SMART c2hcfinal6 752 768 IPR001878 GO:0003676|GO:0008270
Vra3g0844 776 Gene3D - 339 529 IPR027417 -
Vra3g0844 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 322 IPR014001 -
Vra3g0844 776 Gene3D - 116 326 IPR027417 -
Vra3g0844 776 SMART ultradead3 134 339 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0844 Vra-Chr3 8580844 8586726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0844 97 478 Eukaryotic Initiation Factors Gene Family AT1G72730 36.203 8.87e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0844 - - vra:106757668 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0844 3 8580844 8586726 Vra8g1435 8 31328876 31336381 PCT