Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0835 ATGGCGTCTTCATTATCAGCTCAATTTGTTCATTGTCAGAACTCACTTCCACGGGCTCAGGGTAATTTGAGCCGAGATGTGTCAAAGGTTCAAAGGCCAGGTGTTGTCTGTTGCGTTACAGGGTCACGGCTTGGTTACGGTAAAACATTGGCATCTAGGTCACACTATGCCTTGAGGTTCCCTGTGAGGCAACAATCTGAAGCAAGGTCAATTAGATACAGGAGCATGACATGTGTCAACGCCACAGACAATGCTCTAGAGCTTCAAGCCAAGGTGACAACCAAGTGTTTCTTTGACGTAGAAGTTGGGGGTGAGGCTGCTGGCAGAATTGTTTTGGGCCTATTTGGAGATGATGTTCCCAAAACAGCTGAAAATTTCCGTGCTTTGTGCACAGGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGAGACTTTACGGAAGGAAATGGAACTGGTGGAATTAGTATCTATGGTCCAAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATACTGGTCCTGGAGTTCTAAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTCATTTGCACTGTAAAGACTCCATGGCTAGACAATCGTCACGTTGTTTTTGGACATGTCATTGATGGCTTGGATGTTGTGAGGACACTTGAATCCCAGGAGACGAGTAGGTTAGATGTCCCTCGGAAGCCTTGCAGAATTGTTAATTGCGGAGAACTGCCTGTAGATGGTTGA 780 0.4474 MASSLSAQFVHCQNSLPRAQGNLSRDVSKVQRPGVVCCVTGSRLGYGKTLASRSHYALRFPVRQQSEARSIRYRSMTCVNATDNALELQAKVTTKCFFDVEVGGEAAGRIVLGLFGDDVPKTAENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHTGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGLDVVRTLESQETSRLDVPRKPCRIVNCGELPVDG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0835 259 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 51 258 - -
Vra3g0835 259 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 51 258 - -
Vra3g0835 259 Gene3D - 80 258 IPR029000 -
Vra3g0835 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 SUPERFAMILY Cyclophilin-like 88 255 IPR029000 -
Vra3g0835 259 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 253 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 254 IPR002130 GO:0000413|GO:0003755
Vra3g0835 259 CDD cyclophilin_ABH_like 95 253 - -
Vra3g0835 259 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0835 Vra-Chr3 8482270 8484965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0835 108 252 U-box Gene Family AT5G67530 45.890 3.98e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0835 K03768 - gmx:100785805 448.358